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Report for CCDS87024.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87024.1 Public Homo sapiens 22 EIF3L 24 110 108 CCDS HistoryNCBI Gene:51386Re-query CCDS DB by CCDS ID:87024.1Re-query CCDS DB by GeneID:51386See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87024.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000406934.5 ENSP00000384634.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000406934.5Link to Ensembl Protein Viewer:ENSP00000384634.1Re-query CCDS DB by Nucleotide ID:ENST00000406934Re-query CCDS DB by Protein ID:ENSP00000384634
Original member Current member NCBI NM_001363785.2 NP_001350714.1 Accepted alive Link to Nucleotide Sequence:NM_001363785.2Link to Protein Sequence:NP_001350714.1Re-query CCDS DB by Nucleotide ID:NM_001363785Re-query CCDS DB by Protein ID:NP_001350714Link to BLAST:NP_001350714.1

Chromosomal Locations for CCDS 87024.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 37851412 37851490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37858679 37858740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37862969 37863038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37863272 37863345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37870176 37870347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37874370 37874524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37875841 37876011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37877674 37878171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37886765 37886845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37888426 37888464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1401 nt):
ATGAGCTACAGGCCAGTCGTGTCTCCAGTGATGTCATTGACCAGAAGGTGTATGAGATCCAGGACATCTA
TGAGAACAGATGCTGTCTTCCTGATTTTATACAAAGAATTATACTACAGGCACATATATGCCAAAGTCAG
TGGGGGACCTTCCTTGGAGCAGAGGTTTGAATCCTATTACAACTACTGCAATCTCTTCAACTACATTCTT
AATGCCGATGGTCCTGCTCCCCTTGAACTACCCAACCAGTGGCTCTGGGATATTATCGATGAGTTCATCT
ACCAGTTTCAGTCATTCAGTCAGTACCGCTGTAAGACTGCCAAGAAGTCAGAGGAGGAGATTGACTTTCT
TCGTTCCAATCCCAAAATCTGGAATGTTCATAGTGTCCTCAATGTCCTTCATTCCCTGGTAGACAAATCC
AACATCAACCGACAGTTGGAGGTATACACAAGCGGAGGTGACCCTGAGAGTGTGGCTGGGGAGTATGGGC
GGCACTCCCTCTACAAAATGCTTGGTTACTTCAGCCTGGTCGGGCTTCTCCGCCTGCACTCCCTGTTAGG
AGATTACTACCAGGCCATCAAGGTGCTGGAGAACATCGAACTGAACAAGAAGAGTATGTATTCCCGTGTG
CCAGAGTGCCAGGTCACCACATACTATTATGTTGGGTTTGCATATTTGATGATGCGTCGTTACCAGGATG
CCATCCGGGTCTTCGCCAACATCCTCCTCTACATCCAGAGGACCAAGAGCATGTTCCAGAGGACCACGTA
CAAGTATGAGATGATTAACAAGCAGAATGAGCAGATGCATGCGCTGCTGGCCATTGCCCTCACGATGTAC
CCCATGCGTATTGATGAGAGCATTCACCTCCAGCTGCGGGAGAAATATGGGGACAAGATGTTGCGCATGC
AGAAAGGTGACCCACAAGTCTATGAAGAACTTTTCAGTTACTCCTGCCCCAAGTTCCTGTCGCCTGTAGT
GCCCAACTATGATAATGTGCACCCCAACTACCACAAAGAGCCCTTCCTGCAGCAGCTGAAGGTGTTTTCT
GATGAAGTACAGCAGCAGGCCCAGCTTTCAACCATCCGCAGCTTCCTGAAGCTCTACACCACCATGCCTG
TGGCCAAGCTGGCTGGCTTCCTGGACCTCACAGAGCAGGAGTTCCGGATCCAGCTTCTTGTCTTCAAACA
CAAGATGAAGAACCTCGTGTGGACCAGCGGTATCTCAGCCCTGGATGGTGAATTTCAGTCAGCCTCAGAG
GTTGACTTCTACATTGATAAGGACATGATCCACATCGCGGACACCAAGGTCGCCAGGCGTTATGGGGATT
TCTTCATCCGTCAGATCCACAAATTTGAGGAGCTTAATCGAACCCTGAAGAAGATGGGACAGAGACCTTG
A

Translation (466 aa):
MSYRPVVSPVMSLTRRCMRSRTSMRTDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYIL
NADGPAPLELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWNVHSVLNVLHSLVDKS
NINRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFSLVGLLRLHSLLGDYYQAIKVLENIELNKKSMYSRV
PECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMINKQNEQMHALLAIALTMY
PMRIDESIHLQLREKYGDKMLRMQKGDPQVYEELFSYSCPKFLSPVVPNYDNVHPNYHKEPFLQQLKVFS
DEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQEFRIQLLVFKHKMKNLVWTSGISALDGEFQSASE
VDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNRTLKKMGQRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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