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Report for CCDS87038.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87038.1 Public Homo sapiens 3 RPUSD3 24 110 108 CCDS HistoryNCBI Gene:285367Re-query CCDS DB by CCDS ID:87038.1Re-query CCDS DB by GeneID:285367See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87038.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000424438.5 ENSP00000408693.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000424438.5Link to Ensembl Protein Viewer:ENSP00000408693.1Re-query CCDS DB by Nucleotide ID:ENST00000424438Re-query CCDS DB by Protein ID:ENSP00000408693
Original member Current member NCBI NM_001351736.3 NP_001338665.1 Accepted alive Link to Nucleotide Sequence:NM_001351736.3Link to Protein Sequence:NP_001338665.1Re-query CCDS DB by Nucleotide ID:NM_001351736Re-query CCDS DB by Protein ID:NP_001338665Link to BLAST:NP_001338665.1

Chromosomal Locations for CCDS 87038.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 9838197 9838207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9840184 9840307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9840532 9840616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9840698 9840805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9841983 9842082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9842199 9842243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9843465 9843601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9843725 9843753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGGGACCGGTCGTACCTGAATTTTCGAGGCATCAGAGGCAACCCCGCGGCTCCTGCCAACGGTCGGGGC
CCCTCGGGGACCAGCCCTTCGCGGGGCTGCTGCCAAAAAACCTCAGTCGGGAGGAGCTGGTTGATGCGCT
GCGGGCAGCCGTGGTGGACCGGAAAGGACCTCTAGTGACGTTGAACAAGCCACAGGGTCTACCAGTGACA
GGAAAACCAGGAGAGCTGACGTTGTTCTCAGTGCTGCCAGAGCTGAGCCAGTCCCTAGGGCTCAGGGAGC
AGGAGCTTCAGGTTGTCCGAGCATCTGGGAAAGAAAGCTCTGGGCTTGTACTCCTCTCCAGCTGTCCCCA
GACAGCTAGTCGCCTCCAGAAGTACTTCACCCATGCACGGAGAGCCCAAAGGCCCACAGCCACCTACTGT
GCTGTCACTGATGGGATCCCAGCTGCTTCTGAGGGGAAGATCCAGGCTGCCCTGAAACTGGAACACATTG
ATGGGGTCAATCTCACAGTTCCAGTGAAGGCCCCATCCCGAAAGGACATCCTGGAAGGTGTCAAGAAGAC
TCTCAGTCACTTTCGTGTGGTAGCCACAGGCTCTGGCTGTGCCCTGGTCCAGCTGCAGCCACTGACAGGT
CCTGGATGA

Translation (212 aa):
MGPVVPEFSRHQRQPRGSCQRSGPLGDQPFAGLLPKNLSREELVDALRAAVVDRKGPLVTLNKPQGLPVT
GKPGELTLFSVLPELSQSLGLREQELQVVRASGKESSGLVLLSSCPQTASRLQKYFTHARRAQRPTATYC
AVTDGIPAASEGKIQAALKLEHIDGVNLTVPVKAPSRKDILEGVKKTLSHFRVVATGSGCALVQLQPLTG
PG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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