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Report for CCDS8704.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8704.1 Public Homo sapiens 12 LMNTD1 24 110 108 CCDS HistoryNCBI Gene:160492Re-query CCDS DB by CCDS ID:8704.1Re-query CCDS DB by GeneID:160492See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8704.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000282881.10 ENSP00000282881.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000282881.10Link to Ensembl Protein Viewer:ENSP00000282881.6Re-query CCDS DB by Nucleotide ID:ENST00000282881Re-query CCDS DB by Protein ID:ENSP00000282881
Original member Current member NCBI NM_152590.3 NP_689803.2 Accepted alive Link to Nucleotide Sequence:NM_152590.3Link to Protein Sequence:NP_689803.2Re-query CCDS DB by Nucleotide ID:NM_152590Re-query CCDS DB by Protein ID:NP_689803Link to BLAST:NP_689803.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689803.2 388 Q8N9Z9-1 388 100% 0 0

Chromosomal Locations for CCDS 8704.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 25503760 25503800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25518795 25518967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25519858 25520075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25526099 25526218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25526769 25526955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25546374 25546554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25549326 25549546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25553069 25553094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1167 nt):
ATGCTTGAAGGTAGTTGGATTAACAGAAGAGAAGACAAACTTGGAGTATATTCTTTAGTACATTTTTCCC
CAAAGATGTTGGGTTCAGTTGCCACAACACTGCCATTGTCATCTTCAAATTCCAGTGGAATGCCTCTTGG
TTACTATCTGTCTAGTCCTCAGATTAGTAGAGTAACTATATCAACAACTGGACAATTGACTTCTAAAGCT
ACTGTAGGTAGCTGTTCCAGAGTGGAAAACAGCTTGGATGCCAGCCCCTTCTCAGTTCCGAAGAAACAGG
ATGAATCACCCATGATTGGGGATGGAGAAGATTATTTCCTTTCTTTGTTTGGTGATTCAAAGAAACTTAC
AGCACACTCAAACTACACTCAGAAAACTTTAAAATACTTTTCTATGATTCTTGAAGAAGTTGGCCAATTT
ACCTCCAGTTCTCTTGGAGATGTTGAAATAGCTGAAGTGAATGTCAAGGGTTTGTTCGTGAAGCTCATTA
ACTCTTCCCTTGACAAAGAAATGGCAATTGGAGATCATATTCTCCAGCAAAATGTGAATGGACAAACCAT
TTCTTTGTACCGATTCCTTCCAAACATCGTAATGCAGGCAAATTCCACAGTAACAGTGTGGGCAGCAGCA
TCTGAAGCAAAGCATCAACCTCCATCAGATTTTCTTTGGAAGGAACAAGACAAGTTTAGAGCAAGTCCTG
ATTGTATAACAATCCTGTGCAAACCGAACGGTCAAGCCATTGCGTGGTACACCCCTATCCACTGGAAGCA
AGCGTGGGAAAAATTAGATGCTGACGTTGAATTTAACAGATGTTCAGTAGTATCTCCAACATTCCGAAAG
CGTGTGTTTCAGTGGACAGCATCTACAGCTACAATAACTAAAGAAAAACAAGATCAACCTAAGAAAGATA
TCTCAAATTATCAGGTGGAACAAGCTCAAGTTCTTCTTAAGAGAGAGAAGGAAATCCCACCAACCGTTTT
CCCTAATCGCAGCCCTTGGTGCCAGAATCCCTATGTCTCTGCACATCCTTACTGTCCTCTGATTGAACCA
CACAATACATCCACCGCTGGAGGCAGATTGGATAGACAGCCCAGGACTCGGTCAACCAGACCTAATCGAG
CCTCAGGGTCTAAGAAAAAGAAGACATCTGAGTCACAAAAGCAATAA

Translation (388 aa):
MLEGSWINRREDKLGVYSLVHFSPKMLGSVATTLPLSSSNSSGMPLGYYLSSPQISRVTISTTGQLTSKA
TVGSCSRVENSLDASPFSVPKKQDESPMIGDGEDYFLSLFGDSKKLTAHSNYTQKTLKYFSMILEEVGQF
TSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTISLYRFLPNIVMQANSTVTVWAAA
SEAKHQPPSDFLWKEQDKFRASPDCITILCKPNGQAIAWYTPIHWKQAWEKLDADVEFNRCSVVSPTFRK
RVFQWTASTATITKEKQDQPKKDISNYQVEQAQVLLKREKEIPPTVFPNRSPWCQNPYVSAHPYCPLIEP
HNTSTAGGRLDRQPRTRSTRPNRASGSKKKKTSESQKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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