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Report for CCDS87113.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87113.1 Public Homo sapiens 3 TMEM45A 24 110 108 CCDS HistoryNCBI Gene:55076Re-query CCDS DB by CCDS ID:87113.1Re-query CCDS DB by GeneID:55076See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87113.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000403410.5 ENSP00000385089.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000403410.5Link to Ensembl Protein Viewer:ENSP00000385089.1Re-query CCDS DB by Nucleotide ID:ENST00000403410Re-query CCDS DB by Protein ID:ENSP00000385089
Original member Current member NCBI NM_001363876.2 NP_001350805.1 Accepted alive Link to Nucleotide Sequence:NM_001363876.2Link to Protein Sequence:NP_001350805.1Re-query CCDS DB by Nucleotide ID:NM_001363876Re-query CCDS DB by Protein ID:NP_001350805Link to BLAST:NP_001350805.1

Chromosomal Locations for CCDS 87113.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 100519564 100519608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100555209 100555401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100556760 100556972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100558405 100558589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100568822 100568967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100576925 100577018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGACCAATGACTCAGAAGGGAAAATGGGATTTAAACACCCAAAGATCATGGGGAATTTCAGAGGTCATG
CCCTCCCTGGAACCTTCTTTTTTATTATTGGTCTTTGGTGGTGTACAAAGAGTATTCTGAAGTATATCTG
CAAAAAGCAAAAGCGAACCTGCTATCTTGGTTCCAAAACATTATTCTATCGATTGGAAATTTTGGAGGGA
ATTACAATAGTTGGCATGGCTTTAACTGGCATGGCTGGGGAGCAGTTTATTCCTGGAGGGCCCCATCTGA
TGTTATATGACTATAAACAAGGTCACTGGAATCAACTCCTGGGCTGGCATCATTTCACCATGTATTTCTT
CTTTGGGCTGTTGGGTGTGGCAGATATCTTATGTTTCACCATCAGTTCACTTCCTGTGTCCTTAACCAAG
TTAATGTTGTCAAATGCCTTATTTGTGGAGGCCTTTATCTTCTACAACCACACTCATGGCCGGGAAATGC
TGGACATCTTTGTGCACCAGCTGCTGGTTTTGGTCGTCTTTCTGACAGGCCTCGTTGCCTTCCTAGAGTT
CCTTGTTCGGAACAATGTACTTCTGGAGCTATTGCGGTCAAGTCTCATTCTGCTTCAGGGGAGCTGGTTC
TTTCAGATTGGATTTGTCCTGTATCCCCCCAGTGGAGGTCCTGCATGGGATCTGATGGATCATGAAAATA
TTTTGTTTCTCACCATATGCTTTTGTTGGCATTATGCAGTAACCATTGTCATCGTTGGAATGAATTATGC
TTTCATTACCTGGTTGGTTAAATCTAGACTTAAGAGGCTCTGCTCCTCAGAAGTTGGACTTCTGAAAAAT
GCTGAACGAGAACAAGAATCAGAAGAAGAAATGTGA

Translation (291 aa):
MTNDSEGKMGFKHPKIMGNFRGHALPGTFFFIIGLWWCTKSILKYICKKQKRTCYLGSKTLFYRLEILEG
ITIVGMALTGMAGEQFIPGGPHLMLYDYKQGHWNQLLGWHHFTMYFFFGLLGVADILCFTISSLPVSLTK
LMLSNALFVEAFIFYNHTHGREMLDIFVHQLLVLVVFLTGLVAFLEFLVRNNVLLELLRSSLILLQGSWF
FQIGFVLYPPSGGPAWDLMDHENILFLTICFCWHYAVTIVIVGMNYAFITWLVKSRLKRLCSSEVGLLKN
AEREQESEEEM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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