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Report for CCDS8717.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8717.1 Public Homo sapiens 12 FAR2 24 110 108 CCDS HistoryNCBI Gene:55711Re-query CCDS DB by CCDS ID:8717.1Re-query CCDS DB by GeneID:55711See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8717.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000182377.8 ENSP00000182377.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000182377.8Link to Ensembl Protein Viewer:ENSP00000182377.4Re-query CCDS DB by Nucleotide ID:ENST00000182377Re-query CCDS DB by Protein ID:ENSP00000182377
Original member Current member EBI ENST00000536681.8 ENSP00000443291.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000536681.8Link to Ensembl Protein Viewer:ENSP00000443291.2Re-query CCDS DB by Nucleotide ID:ENST00000536681Re-query CCDS DB by Protein ID:ENSP00000443291
Original member Current member NCBI NM_001271783.2 NP_001258712.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001271783.2Link to Protein Sequence:NP_001258712.1Re-query CCDS DB by Nucleotide ID:NM_001271783Re-query CCDS DB by Protein ID:NP_001258712Link to BLAST:NP_001258712.1
Original member Current member NCBI NM_018099.5 NP_060569.3 Accepted alive Link to Nucleotide Sequence:NM_018099.5Link to Protein Sequence:NP_060569.3Re-query CCDS DB by Nucleotide ID:NM_018099Re-query CCDS DB by Protein ID:NP_060569Link to BLAST:NP_060569.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258712.1 515 Q96K12-1 515 100% 0 0
NP_060569.3 515 Q96K12-1 515 100% 0 0

Chromosomal Locations for CCDS 8717.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 29270450 29270638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29293300 29293475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29297021 29297200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29307658 29307835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29309186 29309230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29311028 29311146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29311883 29311950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29316841 29317012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29321795 29321924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29332600 29332727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29333632 29333794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1548 nt):
ATGTCCACAATTGCAGCTTTCTATGGCGGCAAGTCCATTCTCATCACGGGGGCCACAGGCTTTCTGGGCA
AAGTGCTGATGGAGAAGCTGTTTCGCACCAGCCCAGACCTGAAAGTCATTTACATCCTTGTGAGGCCCAA
GGCTGGCCAGACACTGCAGCAGAGGGTTTTCCAGATCCTAGACAGTAAGCTATTTGAGAAAGTCAAAGAA
GTTTGTCCAAATGTGCATGAGAAGATCAGAGCTATTTATGCAGATCTCAATCAGAATGACTTTGCCATCA
GCAAAGAGGACATGCAGGAGCTTCTCTCCTGTACAAACATAATATTTCACTGTGCAGCCACTGTACGCTT
TGACGACACTCTCAGACATGCTGTGCAACTTAACGTCACTGCCACCCGGCAGCTCTTGCTTATGGCTAGT
CAGATGCCAAAGCTGGAAGCCTTTATACATATCTCTACTGCCTATTCAAATTGTAACCTGAAGCACATCG
ATGAAGTTATCTATCCGTGCCCTGTGGAGCCAAAAAAAATCATTGATTCCCTTGAGTGGTTAGACGATGC
TATTATTGACGAGATTACACCCAAGCTGATCAGAGATTGGCCCAATATTTATACCTACACCAAGGCCTTG
GGAGAAATGGTGGTGCAGCAAGAGAGCAGGAACCTGAACATTGCCATCATAAGGCCCTCCATTGTGGGAG
CAACTTGGCAGGAGCCTTTCCCAGGTTGGGTTGATAATATAAATGGACCTAATGGAATCATTATTGCGAC
TGGGAAAGGGTTTCTTCGGGCCATAAAAGCTACTCCAATGGCTGTGGCAGACGTAATTCCAGTTGATACA
GTCGTCAATCTCATGCTAGCTGTAGGATGGTATACTGCAGTTCACAGACCTAAGTCAACATTAGTCTACC
ACATTACATCTGGTAACATGAATCCCTGCAATTGGCACAAAATGGGAGTCCAAGTCTTGGCAACCTTTGA
AAAAATCCCATTTGAGAGACCTTTCAGGAGGCCAAATGCTAATTTTACCAGCAACAGCTTCACATCACAG
TACTGGAATGCGGTCAGCCACCGGGCCCCTGCCATTATCTATGACTGCTATCTGCGGCTCACTGGAAGGA
AGCCCAGGATGACAAAGCTCATGAATCGGCTTTTAAGAACTGTTTCCATGTTGGAGTATTTCATCAACCG
GAGTTGGGAATGGAGCACGTACAATACAGAAATGCTGATGTCTGAGCTGAGTCCTGAAGACCAGAGAGTA
TTCAACTTTGACGTGCGCCAGTTGAACTGGTTGGAATACATTGAAAATTATGTTTTGGGAGTTAAAAAAT
ACTTATTGAAAGAGGATATGGCTGGGATCCCAAAAGCAAAGCAACGCTTAAAAAGGCTCCGAAATATTCA
CTACCTCTTTAATACTGCCCTCTTCCTTATCGCCTGGCGCCTTCTCATTGCAAGATCTCAGATGGCTCGG
AATGTCTGGTTCTTCATTGTAAGCTTCTGTTATAAATTCCTCTCCTACTTTAGAGCATCCAGCACGCTCA
AAGTTTAA

Translation (515 aa):
MSTIAAFYGGKSILITGATGFLGKVLMEKLFRTSPDLKVIYILVRPKAGQTLQQRVFQILDSKLFEKVKE
VCPNVHEKIRAIYADLNQNDFAISKEDMQELLSCTNIIFHCAATVRFDDTLRHAVQLNVTATRQLLLMAS
QMPKLEAFIHISTAYSNCNLKHIDEVIYPCPVEPKKIIDSLEWLDDAIIDEITPKLIRDWPNIYTYTKAL
GEMVVQQESRNLNIAIIRPSIVGATWQEPFPGWVDNINGPNGIIIATGKGFLRAIKATPMAVADVIPVDT
VVNLMLAVGWYTAVHRPKSTLVYHITSGNMNPCNWHKMGVQVLATFEKIPFERPFRRPNANFTSNSFTSQ
YWNAVSHRAPAIIYDCYLRLTGRKPRMTKLMNRLLRTVSMLEYFINRSWEWSTYNTEMLMSELSPEDQRV
FNFDVRQLNWLEYIENYVLGVKKYLLKEDMAGIPKAKQRLKRLRNIHYLFNTALFLIAWRLLIARSQMAR
NVWFFIVSFCYKFLSYFRASSTLKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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