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Report for CCDS87214.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87214.1 Public Homo sapiens 4 RBPJ 24 110 108 CCDS HistoryNCBI Gene:3516Re-query CCDS DB by CCDS ID:87214.1Re-query CCDS DB by GeneID:3516See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 87214.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000345843.8 ENSP00000305815.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000345843.8Link to Ensembl Protein Viewer:ENSP00000305815.6Re-query CCDS DB by Nucleotide ID:ENST00000345843Re-query CCDS DB by Protein ID:ENSP00000305815
Original member Current member EBI ENST00000504423.2 ENSP00000421804.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000504423.2Link to Ensembl Protein Viewer:ENSP00000421804.2Re-query CCDS DB by Nucleotide ID:ENST00000504423Re-query CCDS DB by Protein ID:ENSP00000421804
Original member Current member EBI ENST00000507561.5 ENSP00000423907.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000507561.5Link to Ensembl Protein Viewer:ENSP00000423907.1Re-query CCDS DB by Nucleotide ID:ENST00000507561Re-query CCDS DB by Protein ID:ENSP00000423907
Original member Current member EBI ENST00000681264.1 ENSP00000505255.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681264.1Link to Ensembl Protein Viewer:ENSP00000505255.1Re-query CCDS DB by Nucleotide ID:ENST00000681264Re-query CCDS DB by Protein ID:ENSP00000505255
Original member Current member EBI ENST00000681484.1 ENSP00000505636.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681484.1Link to Ensembl Protein Viewer:ENSP00000505636.1Re-query CCDS DB by Nucleotide ID:ENST00000681484Re-query CCDS DB by Protein ID:ENSP00000505636
Original member Current member NCBI NM_001363577.2 NP_001350506.1 Accepted alive Link to Nucleotide Sequence:NM_001363577.2Link to Protein Sequence:NP_001350506.1Re-query CCDS DB by Nucleotide ID:NM_001363577Re-query CCDS DB by Protein ID:NP_001350506Link to BLAST:NP_001350506.1
Original member Current member NCBI NM_203283.5 NP_976028.2 Accepted alive Link to Nucleotide Sequence:NM_203283.5Link to Protein Sequence:NP_976028.2Re-query CCDS DB by Nucleotide ID:NM_203283Re-query CCDS DB by Protein ID:NP_976028Link to BLAST:NP_976028.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350506.1 465 Q06330-5 465 100% 0 0
NP_976028.2 465 Q06330-5 465 100% 0 0

Chromosomal Locations for CCDS 87214.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 26406182 26406270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 26415475 26415640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 26420551 26420725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 26424342 26424479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 26424631 26424743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 26428720 26428860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 26429898 26430053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 26430419 26430522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 26430692 26431007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGCGAAATTATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTCATGCAAAAGTTGCACAGAAGT
CATATGGAAATGAAAAAAGGTTTTTTTGCCCACCTCCTTGTGTATATCTTATGGGCAGTGGATGGAAGAA
AAAAAAAGAACAAATGGAACGCGATGGTTGTTCTGAACAAGAGTCTCAACCGTGTGCATTTATTGGGATA
GGAAATAGTGACCAAGAAATGCAGCAGCTAAACTTGGAAGGAAAGAACTATTGCACAGCCAAAACATTGT
ATATATCTGACTCAGACAAGCGAAAGCACTTCATGTTGTCTGTAAAGATGTTCTATGGCAACAGTGATGA
CATTGGTGTGTTCCTCAGCAAGCGGATAAAAGTCATCTCCAAACCTTCCAAAAAGAAGCAGTCATTGAAA
AATGCTGACTTATGCATTGCCTCAGGAACAAAGGTGGCTCTGTTTAATCGACTACGATCCCAGACAGTTA
GTACCAGATACTTGCATGTAGAAGGAGGTAATTTTCATGCCAGTTCACAGCAGTGGGGAGCCTTTTTTAT
TCATCTCTTGGATGATGATGAATCAGAAGGAGAAGAATTCACAGTCCGAGATGGCTACATCCATTATGGA
CAAACAGTCAAACTTGTGTGCTCAGTTACTGGCATGGCACTCCCAAGATTGATAATTAGGAAAGTTGATA
AGCAGACCGCATTATTGGATGCAGATGATCCTGTGTCACAACTCCATAAATGTGCATTTTACCTTAAGGA
TACAGAAAGAATGTATTTGTGCCTTTCTCAAGAAAGAATAATTCAATTTCAGGCCACTCCATGTCCAAAA
GAACCAAATAAAGAGATGATAAATGATGGCGCTTCCTGGACAATCATTAGCACAGATAAGGCAGAGTATA
CATTTTATGAGGGAATGGGCCCTGTCCTTGCCCCAGTCACTCCTGTGCCTGTGGTAGAGAGCCTTCAGTT
GAATGGCGGTGGGGACGTAGCAATGCTTGAACTTACAGGACAGAATTTCACTCCAAATTTACGAGTGTGG
TTTGGGGATGTAGAAGCTGAAACTATGTACAGGTGTGGAGAGAGTATGCTCTGTGTCGTCCCAGACATTT
CTGCATTCCGAGAAGGTTGGAGATGGGTCCGGCAACCAGTCCAGGTTCCAGTAACTTTGGTCCGAAATGA
TGGAATCATTTATTCCACCAGCCTTACCTTTACCTACACACCAGAACCAGGGCCGCGGCCACATTGCAGT
GCAGCAGGAGCAATCCTTCGAGCCAATTCAAGCCAGGTGCCCCCTAACGAATCAAACACAAACAGCGAGG
GAAGTTACACAAACGCCAGCACAAATTCAACCAGTGTCACATCATCTACAGCCACAGTGGTATCCTAA

Translation (465 aa):
MRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGI
GNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLK
NADLCIASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDGYIHYG
QTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPK
EPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFTPNLRVW
FGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCS
AAGAILRANSSQVPPNESNTNSEGSYTNASTNSTSVTSSTATVVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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