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Report for CCDS87299.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87299.1 Public Homo sapiens 5 CENPK 24 110 108 CCDS HistoryNCBI Gene:64105Re-query CCDS DB by CCDS ID:87299.1Re-query CCDS DB by GeneID:64105See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87299.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000510693.5 ENSP00000425686.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000510693.5Link to Ensembl Protein Viewer:ENSP00000425686.1Re-query CCDS DB by Nucleotide ID:ENST00000510693Re-query CCDS DB by Protein ID:ENSP00000425686
Original member Current member NCBI NM_001349368.2 NP_001336297.1 Accepted alive Link to Nucleotide Sequence:NM_001349368.2Link to Protein Sequence:NP_001336297.1Re-query CCDS DB by Nucleotide ID:NM_001349368Re-query CCDS DB by Protein ID:NP_001336297Link to BLAST:NP_001336297.1

Chromosomal Locations for CCDS 87299.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 65518475 65518633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65521475 65521528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65528452 65528578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65529117 65529199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65542802 65542848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65551564 65551636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65552493 65552549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65554797 65554817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (621 nt):
ATGTGGAAAGATATGGAAGAATGTCAGAATAAATTATCACTTATTGGAACTGAAACACTCACCGATTCAA
ATGCTCAGCTATCATTGTTAATTATGCAAGTAAAATGTTTAACCGCTGAACTCAGTCAATGGCAGAAAAA
AACACCTGAAACAATTCCCTTGACTGAAGACGTTCTCATAACATTAGGAAAAGAAGAGTTCCAAAAGCTG
AGACAAGATCTTGAAATGGTACTGTCCACTAAGGAGTCAAAGAATGAAAAGTTAAAGGAAGACTTAGAAA
GAATCTTTAATGAACTGAAAACTAAAATGCTTAATATAAAAGAATATAAGGAGAAACTCTTGAGTACCTT
GGGCGAGTTTCTAGAAGACCATTTTCCTCTGCCTGATAGAAGTGTTAAAAAGAAAAAGAAAAACATTCAA
GAATCATCTGTAAACCTGATAACACTGCATGAAATGTTAGAGATTCTTATAAATAGATTATTTGATGTTC
CACATGATCCATATGTCAAAATTAGTGATTCCTTTTGGCCACCTTATGTTGAGCTGCTGCTGCGTAATGG
AATTGCCTTGAGACATCCAGAAGATCCAACCCGAATAAGATTAGAAGCTTTCCATCAGTAA

Translation (206 aa):
MWKDMEECQNKLSLIGTETLTDSNAQLSLLIMQVKCLTAELSQWQKKTPETIPLTEDVLITLGKEEFQKL
RQDLEMVLSTKESKNEKLKEDLERIFNELKTKMLNIKEYKEKLLSTLGEFLEDHFPLPDRSVKKKKKNIQ
ESSVNLITLHEMLEILINRLFDVPHDPYVKISDSFWPPYVELLLRNGIALRHPEDPTRIRLEAFHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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