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Report for CCDS87313.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87313.1 Public Homo sapiens 5 MEF2C 24 110 108 CCDS HistoryNCBI Gene:4208Re-query CCDS DB by CCDS ID:87313.1Re-query CCDS DB by GeneID:4208See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87313.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000514015.5 ENSP00000424606.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000514015.5Link to Ensembl Protein Viewer:ENSP00000424606.1Re-query CCDS DB by Nucleotide ID:ENST00000514015Re-query CCDS DB by Protein ID:ENSP00000424606
Original member Current member EBI ENST00000514028.5 ENSP00000426665.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000514028.5Link to Ensembl Protein Viewer:ENSP00000426665.2Re-query CCDS DB by Nucleotide ID:ENST00000514028Re-query CCDS DB by Protein ID:ENSP00000426665
Original member Current member EBI ENST00000637732.1 ENSP00000490241.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000637732.1Link to Ensembl Protein Viewer:ENSP00000490241.1Re-query CCDS DB by Nucleotide ID:ENST00000637732Re-query CCDS DB by Protein ID:ENSP00000490241
Original member Current member EBI ENST00000636998.1 ENSP00000490630.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000636998.1Link to Ensembl Protein Viewer:ENSP00000490630.1Re-query CCDS DB by Nucleotide ID:ENST00000636998Re-query CCDS DB by Protein ID:ENSP00000490630
Original member Current member NCBI NM_001363581.2 NP_001350510.1 Accepted alive Link to Nucleotide Sequence:NM_001363581.2Link to Protein Sequence:NP_001350510.1Re-query CCDS DB by Nucleotide ID:NM_001363581Re-query CCDS DB by Protein ID:NP_001350510Link to BLAST:NP_001350510.1
Original member Current member NCBI NM_001364334.2 NP_001351263.1 Accepted alive Link to Nucleotide Sequence:NM_001364334.2Link to Protein Sequence:NP_001351263.1Re-query CCDS DB by Nucleotide ID:NM_001364334Re-query CCDS DB by Protein ID:NP_001351263Link to BLAST:NP_001351263.1
Original member Current member NCBI NM_001364335.2 NP_001351264.1 Accepted alive Link to Nucleotide Sequence:NM_001364335.2Link to Protein Sequence:NP_001351264.1Re-query CCDS DB by Nucleotide ID:NM_001364335Re-query CCDS DB by Protein ID:NP_001351264Link to BLAST:NP_001351264.1
Original member Current member NCBI NM_001364336.2 NP_001351265.1 Accepted alive Link to Nucleotide Sequence:NM_001364336.2Link to Protein Sequence:NP_001351265.1Re-query CCDS DB by Nucleotide ID:NM_001364336Re-query CCDS DB by Protein ID:NP_001351265Link to BLAST:NP_001351265.1
Original member Current member NCBI NM_001364337.2 NP_001351266.1 Accepted alive Link to Nucleotide Sequence:NM_001364337.2Link to Protein Sequence:NP_001351266.1Re-query CCDS DB by Nucleotide ID:NM_001364337Re-query CCDS DB by Protein ID:NP_001351266Link to BLAST:NP_001351266.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350510.1 441 Q06413-3 441 100% 0 0
NP_001351263.1 441 Q06413-3 441 100% 0 0
NP_001351264.1 441 Q06413-3 441 100% 0 0
NP_001351265.1 441 Q06413-3 441 100% 0 0
NP_001351266.1 441 Q06413-3 441 100% 0 0

Chromosomal Locations for CCDS 87313.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 88722604 88722829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88728493 88728628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88729218 88729347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88730211 88730234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88731729 88731901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88749070 88749117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88751857 88752043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88761185 88761328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88804598 88804801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88823735 88823788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1326 nt):
ATGGGGAGAAAAAAGATTCAGATTACGAGGATTATGGATGAACGTAACAGACAGGTGACATTTACAAAGA
GGAAATTTGGGTTGATGAAGAAGGCTTATGAGCTGAGCGTGCTGTGTGACTGTGAGATTGCGCTGATCAT
CTTCAACAGCACCAACAAGCTGTTCCAGTATGCCAGCACCGACATGGACAAAGTGCTTCTCAAGTACACG
GAGTACAACGAGCCGCATGAGAGCCGGACAAACTCAGACATCGTGGAGACGTTGAGAAAGAAGGGCCTTA
ATGGCTGTGACAGCCCAGACCCCGATGCGGACGATTCCGTAGGTCACAGCCCTGAGTCTGAGGACAAGTA
CAGGAAAATTAACGAAGATATTGATCTAATGATCAGCAGGCAAAGATTGTGTGCTGTTCCACCTCCCAAC
TTCGAGATGCCAGTCTCCATCCCAGTGTCCAGCCACAACAGTTTGGTGTACAGCAACCCTGTCAGCTCAC
TGGGAAACCCCAACCTATTGCCACTGGCTCACCCTTCTCTGCAGAGGAATAGTATGTCTCCTGGTGTAAC
ACATCGACCTCCAAGTGCAGGTAACACAGGTGGTCTGATGGGTGGAGACCTCACGTCTGGTGCAGGCACC
AGTGCAGGGAACGGGTATGGCAATCCCCGAAACTCACCAGGTCTGCTGGTCTCACCTGGTAACTTGAACA
AGAATATGCAAGCAAAATCTCCTCCCCCAATGAATTTAGGAATGAATAACCGTAAACCAGATCTCCGAGT
TCTTATTCCACCAGGCAGCAAGAATACGATGCCATCAGTGTCTGAGGATGTCGACCTGCTTTTGAATCAA
AGGATAAATAACTCCCAGTCGGCTCAGTCATTGGCTACCCCAGTGGTTTCCGTAGCAACTCCTACTTTAC
CAGGACAAGGAATGGGAGGATATCCATCAGCCATTTCAACAACATATGGTACCGAGTACTCTCTGAGTAG
TGCAGACCTGTCATCTCTGTCTGGGTTTAACACCGCCAGCGCTCTTCACCTTGGTTCAGTAACTGGCTGG
CAACAGCAACACCTACATAACATGCCACCATCTGCCCTCAGTCAGTTGGGAGACCGTACCACCACCCCTT
CGAGATACCCACAACACACGCGCCACGAGGCGGGGAGATCTCCTGTTGACAGCTTGAGCAGCTGTAGCAG
TTCGTACGACGGGAGCGACCGAGAGGATCACCGGAACGAATTCCACTCCCCCATTGGACTCACCAGACCT
TCGCCGGACGAAAGGGAAAGTCCCTCAGTCAAGCGCATGCGACTTTCTGAAGGATGGGCAACATGA

Translation (441 aa):
MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYT
EYNEPHESRTNSDIVETLRKKGLNGCDSPDPDADDSVGHSPESEDKYRKINEDIDLMISRQRLCAVPPPN
FEMPVSIPVSSHNSLVYSNPVSSLGNPNLLPLAHPSLQRNSMSPGVTHRPPSAGNTGGLMGGDLTSGAGT
SAGNGYGNPRNSPGLLVSPGNLNKNMQAKSPPPMNLGMNNRKPDLRVLIPPGSKNTMPSVSEDVDLLLNQ
RINNSQSAQSLATPVVSVATPTLPGQGMGGYPSAISTTYGTEYSLSSADLSSLSGFNTASALHLGSVTGW
QQQHLHNMPPSALSQLGDRTTTPSRYPQHTRHEAGRSPVDSLSSCSSSYDGSDREDHRNEFHSPIGLTRP
SPDERESPSVKRMRLSEGWAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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