NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8732.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8732.1 Public Homo sapiens 12 SYT10 24 110 108 CCDS HistoryNCBI Gene:341359Re-query CCDS DB by CCDS ID:8732.1Re-query CCDS DB by GeneID:341359See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8732.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000228567.7 ENSP00000228567.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000228567.7Link to Ensembl Protein Viewer:ENSP00000228567.3Re-query CCDS DB by Nucleotide ID:ENST00000228567Re-query CCDS DB by Protein ID:ENSP00000228567
Original member Current member NCBI NM_198992.4 NP_945343.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198992.4Link to Protein Sequence:NP_945343.1Re-query CCDS DB by Nucleotide ID:NM_198992Re-query CCDS DB by Protein ID:NP_945343Link to BLAST:NP_945343.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_945343.1 523 Q6XYQ8 523 100% 0 0

Chromosomal Locations for CCDS 8732.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 33376830 33376901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 33379832 33379961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 33382349 33382520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 33385171 33385291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 33406789 33407356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 33426138 33426495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 33439372 33439522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1572 nt):
ATGAGTTTCCACAAGGAGGACGGAGTGAACAGTCTGTGCCAGAAGGCTCTGCACATCGTCACCGAGCTGT
GC
TTCGCCGGCCAGGTGGAGTGGGAGAAGTGCTCGGGCATCTTCCCTCGGGACAGGGGCAGCCAGGGCGG
A
AGCAGCACAGATATTTCAGTCAGCCTGTTAGCTGTCGTTGTCAGCTTTTGTGGACTGGCCTTGTTGGTT
GTC
TCACTTTTTGTCTTCTGGAAGCTGTGTTGGCCATGCTGGAAAAGCAAACCTGTGACTTCCAACATCA
CT
ACGCTTCCACAGAGCATTTCAAGTGCTCCTACTGAAGTTTTTGAGACTGAAGAGAAAAAAGAAATTAA
G
GAAAATGAAAAGCCAGCCGTAAAAGCTATTGAGCCTGCAATAAAAATCAGCCACACTTCCCCTGACATC
CCA
GCAGAAGTCCAAACTGCTTTAAAAGAACATTTAATTAAACATGCACGTGTGCAAAGACAAATTACTG
AG
CCTACGTCATCAACCCGCCACAGTTCCTTCCGAAGACACCTGCCGAGGCAAATGCAGGTTTCCAGTGT
T
GATTTTAGCATGGGCACAGAACCTGTTTTACAACGAGGAGAAACAACAACCAGCATTGGGAGGATAAAG
CCA
GAACTCTACAAACAGAAATCAGTTGACTCTGAGGGCAACCAAAACGAAGATGTCAAAATCTGTGGGA
AA
CTTAACTTTACCCTCCAGTATGATTATGAAAATGAACTTCTAGTTGTTAAAATTATCAAAGCTTTAGA
T
CTCCCTGCTAAAGACTTCACAGGAACTTCTGACCCTTATGTGAAGATGTATCTTCTTCCAGATAGGAAA
AAG
AAATTTCAGACCCGCGTGCACAGAAAGACTTTAAATCCTCTATTTGATGAAACTTTTCAATTTCCTG
TA
GCATATGATCAACTAAGCAACCGAAAACTACATTTCAGTGTGTATGATTTTGACAGATTTTCTAGACA
T
GACATGATTGGGGAAGTGATTCTTGATAATTTGTTTGAAGTCTCTGATCTCTCCAGGGAAGCCACAGTA
TGG
AAAGATATTCACTGTGCTACCACAGAAAGTATAGACCTGGGTGAAATCATGTTTTCCCTTTGTTACC
TA
CCGACGGCTGGGCGTATGACATTGACAGTCATTAAGTGCAGAAATCTGAAGGCGATGGATATTACTGG
C
TCATCAGATCCTTATGTCAAAGTGTCCCTGATGTGTGAAGGTCGAAGATTAAAAAAGAGGAAAACAACT
ACA
AAGAAAAACACTCTAAACCCTGTGTACAATGAGGCCATTATTTTTGACATCCCTCCAGAGAACGTGG
AC
CAGGTCAGCCTCTCCATTGCGGTCATGGATTACGATAGGGTAGGACACAATGAGGTCATAGGAGTGTG
C
AGAACAGGACTGGATGCTGAGGGTCTTGGGCGAGACCACTGGAATGAAATGCTGGCCTATCATCGAAAA
CCA
ATAACGCACTGGCACCCATTGCTGGAGTTACCTGGCCGGGCGACCAGTTTTGATAGTCAAGGATCCT
GC
CCTTCTCCTAAACCACCTTCCACACCATAA


Translation (523 aa):
MSFHKEDGVNSLCQKALHIVTELCFAGQVEWEKCSGIFPRDRGSQGGSSTDISVSLLAVVVSFCGLALLV
V
SLFVFWKLCWPCWKSKPVTSNITTLPQSISSAPTEVFETEEKKEIKENEKPAVKAIEPAIKISHTSPDI
P
AEVQTALKEHLIKHARVQRQITEPTSST
RHSSFRRHLPRQMQVSSVDFSMGTEPVLQRGETTTSIGRIK
P
ELYKQKSVDSEGNQNEDVKICGKLNFTLQYDYENELLVVKIIKALDLPAKDFTGTSDPYVKMYLLPDRK
K
KFQTRVHRKTLNPLFDETFQFPVAYDQLSNRKLHFSVYDFDRFSRHDMIGEVILDNLFEVSDLSREATV
W
KDIHCATT
ESIDLGEIMFSLCYLPTAGRMTLTVIKCRNLKAMDITGSSDPYVKVSLMCEGRRLKKRKTT
T
KKNTLNPVYNEAIIFDIPPENVDQVSLSIAVMDYD
RVGHNEVIGVCRTGLDAEGLGRDHWNEMLAYHRK
P
ITHWHPLLE
LPGRATSFDSQGSCPSPKPPSTP



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser