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Report for CCDS87373.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87373.1 Public Homo sapiens 6 RIPOR2 24 110 108 CCDS HistoryNCBI Gene:9750Re-query CCDS DB by CCDS ID:87373.1Re-query CCDS DB by GeneID:9750See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87373.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000538035.6 ENSP00000441138.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000538035.6Link to Ensembl Protein Viewer:ENSP00000441138.2Re-query CCDS DB by Nucleotide ID:ENST00000538035Re-query CCDS DB by Protein ID:ENSP00000441138
Original member Current member NCBI NM_001346031.2 NP_001332960.1 Accepted alive Link to Nucleotide Sequence:NM_001346031.2Link to Protein Sequence:NP_001332960.1Re-query CCDS DB by Nucleotide ID:NM_001346031Re-query CCDS DB by Protein ID:NP_001332960Link to BLAST:NP_001332960.1
Original member Current member NCBI NM_001346032.2 NP_001332961.1 Accepted alive Link to Nucleotide Sequence:NM_001346032.2Link to Protein Sequence:NP_001332961.1Re-query CCDS DB by Nucleotide ID:NM_001346032Re-query CCDS DB by Protein ID:NP_001332961Link to BLAST:NP_001332961.1

Chromosomal Locations for CCDS 87373.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 24806373 24806473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24809717 24809807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24818542 24818625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24825226 24825428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24828137 24828295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24830509 24830670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24832256 24832391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24835703 24835871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24839091 24839272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24842862 24843554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24848025 24848154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24849802 24849950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24850597 24850722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24852575 24852618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24860973 24861036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24865301 24865450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24869094 24869147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24870866 24870889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24872881 24872959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24873644 24873799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24875691 24875791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3057 nt):
ATGTTGGTAGGATCCCAGTCTTTTTCGCCTGGAGGGCCCAATGGGATCATTAGAAGCCAGTCCTTTGCGG
GTTTCAGCGGCCTCCAGGAAAGGCGATCCAGGTGTAACTCCTTCATTGAAAATTCCTCCGCTCTCAAGAA
GCCTCAGGCCAAACTGAAGAAAATGCACAATTTAGGCCACAAAAACAACAATCCCCCCAAAGAGCCTCAG
CCTAAAAGGGTGGAAGAAGTCTACAGGGCCTTGAAAAATGGACTTGATGAATATCTGGAGGTTCACCAGA
CGGAGCTGGACAAGTTGACAGCTCAGTTAAAAGATATGAAAAGAAACTCTCGCCTGGGTGTACTGTATGA
CCTAGACAAGCAAATTAAAACAATTGAAAGATACATGAGACGCCTGGAGTTTCATATAAGTAAGGTAGAT
GAACTCTATGAAGCTTATTGTATCCAGCGACGCCTCCAGGATGGTGCCAGCAAAATGAAGCAAGCCTTCG
CAACATCCCCTGCCAGCAAAGCTGCCCGGGAGAGTCTGACAGAGATCAATCGGAGCTTCAAGGAGTACAC
AGAGAATATGTGCACCATTGAAGTGGAGCTAGAGAATCTGCTGGGAGAATTCTCCATCAAGATGAAAGGT
CTGGCTGGCTTTGCACGCCTCTGTCCTGGAGATCAATATGAAATTTTCATGAAGTATGGCCGGCAGCGGT
GGAAACTGAAAGGCAAAATAGAAGTAAATGGCAAGCAGAGCTGGGATGGAGAAGAAACAGTTTTTCTGCC
CCTGATAGTTGGGTTCATCTCCATCAAGGTCACGGAGCTCAAAGGGCTAGCAACTCACATCCTGGTAGGT
AGCGTGACCTGTGAGACCAAAGAGCTGTTTGCAGCCCGACCTCAGGTAGTGGCTGTCGACATCAATGACC
TTGGTACCATCAAACTGAACCTGGAAATCACCTGGTATCCATTTGACGTGGAGGACATGACCGCATCCTC
AGGCGCTGGGAACAAGGCAGCAGCCCTTCAGAGGAGAATGTCCATGTACAGCCAGGGTACCCCGGAAACG
CCCACCTTCAAAGACCACTCCTTCTTTTCAAATCTACCTGATGACATCTTTGAAAATGGAAAGGCAGCCG
AGGAGAAAATGCCACTGTCGCTCAGCTTCAGTGACCTGCCCAACGGGGACTGCGCCCTCACCTCCCACTC
AACAGGCTCCCCTTCCAACTCAACAAATCCAGAAATTACCATCACCCCTGCGGAGTTTAACCTCAGCAGC
TTGGCCTCCCAGAATGAGGGTATGGATGACACCAGCTCAGCATCTTCCAGGAACTCCCTGGGAGAAGGCC
AAGAGCCAAAGTCACACCTGAAGGAGGAAGACCCAGAGGAGCCCAGAAAACCTGCCTCGGCCCCATCTGA
GGCTTGCCGCCGACAGTCCTCAGGTGCTGGGGCTGAGCACCTGTTCCTTGAGAATGATGTTGCAGAAGCA
CTTCTGCAAGAGTCTGAGGAGGCCTCTGAGCTCAAGCCTGTGGAACTGGACACTTCGGAAGGAAACATCA
CAAAGCAGCTGGTCAAGAGGCTCACATCTGCAGAGGTGCCAATGGCCACAGACAGGCTGCTCTCTGAGGG
TTCTGTTGGTGGAGAATCTGAAGGCTGCAGATCCTTTCTAGATGGAAGCTTAGAGGATGCTTTTAATGGG
CTTTTACTTGCATTAGAACCACATAAAGAGCAGTATAAAGAGTTTCAGGATCTGAACCAAGAAGTCATGA
ATTTGGATGATATTCTAAAATGCAAGCCAGCAGTAAGCCGCAGCAGGTCTTCCAGTTTAAGTCTCACAGT
TGAAAGTGCTTTAGAAAGCTTTGATTTCCTGAACACCTCTGATTTTGACGAGGAGGAGGATGGTGATGAG
GTTTGTAATGTTGGCGGAGGTGCTGACTCAGTATTTTCAGACACTGAGACTGAGAAACACAGTTACAGGT
CGGTTCACCCAGAAGCCAGGGGGCATCTCAGTGAAGCGCTCACTGAAGACACAGGAGTTGGGACCAGTGT
GGCAGGAAGTCCTCTCCCACTGACCACAGGCAACGAGAGCCTGGACATCACCATCGTCAGGCACCTCCAG
TACTGCACCCAACTCGTGCAGCAAATTGTTTTCTCAAGCAAAACCCCATTTGTGGCAAGAAGTCTCTTAG
AGAAGCTTTCTAGGCAGATCCAAGTGATGGAGAAACTCGCAGCTGTCAGTGATGAGAACATAGGAAATAT
CAGTTCTGTTGTGGAAGCCATACCAGAATTTCACAAAAAGCTGTCTTTGCTGTCATTCTGGACCAAGTGC
TGCAGCCCTGTTGGTGTCTACCACAGCCCAGCGGACAGAGTGATGAAGCAGCTGGAGGCCAGCTTTGCCA
GAACTGTCAACAAAGAATATCCAGGACTTGCAGACCCAGTGTTTCGAACCCTGGTGTCCCAAATTCTGGA
CCGGGCTGAGCCTCTGCTTTCCTCCAGCCTGTCCTCGGAAGTCGTCACTGTTTTCCAGTATTACAGTTAC
TTCACCAGCCACGGCGTCAGTGACCTGGAGAGTTACCTGAGCCAGCTGGCCAGGCAAGTTTCCATGGTTC
AGACTCTGCAATCACTAAGAGATGAAAAACTGCTACAAACCATGAGTGACCTTGCTCCCAGCAACCTCCT
GGCCCAGCAGGAAGTACTCAGGACTCTGGCTCTGCTATTAACCAGAGAGGACAACGAAGTTAGTGAGGCT
GTGACGCTTTACTTGGCAGCAGCCTCCAAAAATCAGCATTTCAGGGAAAAGGCCTTGCTCTATTACTGTG
AAGCACTAACAAAGACAAACCTCCAGCTCCAGAAAGCAGCTTGCCTGGCTCTGAAAATCCTTGAGGCTAC
TGAAAGCATTAAAATGCTGGTGACATTGTGTCAATCTGATACTGAAGAAATCAGAAATGTGGCCTCAGAA
ACCCTCTTGTCTCTGGGAGAAGATGGGCGGCTGGCATATGAACAATTGGACAAATTTCCTCGAGACTGTG
TTAAAGTCGGAGGTCGTCATGGAACTGAAGTTGCCACAGCCTTTTAA

Translation (1018 aa):
MLVGSQSFSPGGPNGIIRSQSFAGFSGLQERRSRCNSFIENSSALKKPQAKLKKMHNLGHKNNNPPKEPQ
PKRVEEVYRALKNGLDEYLEVHQTELDKLTAQLKDMKRNSRLGVLYDLDKQIKTIERYMRRLEFHISKVD
ELYEAYCIQRRLQDGASKMKQAFATSPASKAARESLTEINRSFKEYTENMCTIEVELENLLGEFSIKMKG
LAGFARLCPGDQYEIFMKYGRQRWKLKGKIEVNGKQSWDGEETVFLPLIVGFISIKVTELKGLATHILVG
SVTCETKELFAARPQVVAVDINDLGTIKLNLEITWYPFDVEDMTASSGAGNKAAALQRRMSMYSQGTPET
PTFKDHSFFSNLPDDIFENGKAAEEKMPLSLSFSDLPNGDCALTSHSTGSPSNSTNPEITITPAEFNLSS
LASQNEGMDDTSSASSRNSLGEGQEPKSHLKEEDPEEPRKPASAPSEACRRQSSGAGAEHLFLENDVAEA
LLQESEEASELKPVELDTSEGNITKQLVKRLTSAEVPMATDRLLSEGSVGGESEGCRSFLDGSLEDAFNG
LLLALEPHKEQYKEFQDLNQEVMNLDDILKCKPAVSRSRSSSLSLTVESALESFDFLNTSDFDEEEDGDE
VCNVGGGADSVFSDTETEKHSYRSVHPEARGHLSEALTEDTGVGTSVAGSPLPLTTGNESLDITIVRHLQ
YCTQLVQQIVFSSKTPFVARSLLEKLSRQIQVMEKLAAVSDENIGNISSVVEAIPEFHKKLSLLSFWTKC
CSPVGVYHSPADRVMKQLEASFARTVNKEYPGLADPVFRTLVSQILDRAEPLLSSSLSSEVVTVFQYYSY
FTSHGVSDLESYLSQLARQVSMVQTLQSLRDEKLLQTMSDLAPSNLLAQQEVLRTLALLLTREDNEVSEA
VTLYLAAASKNQHFREKALLYYCEALTKTNLQLQKAACLALKILEATESIKMLVTLCQSDTEEIRNVASE
TLLSLGEDGRLAYEQLDKFPRDCVKVGGRHGTEVATAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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