NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8742.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8742.1 Public Homo sapiens 12 PRICKLE1 24 110 108 CCDS HistoryNCBI Gene:144165Re-query CCDS DB by CCDS ID:8742.1Re-query CCDS DB by GeneID:144165See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8742.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000345127.9 ENSP00000345064.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000345127.9Link to Ensembl Protein Viewer:ENSP00000345064.3Re-query CCDS DB by Nucleotide ID:ENST00000345127Re-query CCDS DB by Protein ID:ENSP00000345064
Original member Current member EBI ENST00000445766.7 ENSP00000398947.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000445766.7Link to Ensembl Protein Viewer:ENSP00000398947.2Re-query CCDS DB by Nucleotide ID:ENST00000445766Re-query CCDS DB by Protein ID:ENSP00000398947
Original member Current member EBI ENST00000455697.6 ENSP00000401060.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000455697.6Link to Ensembl Protein Viewer:ENSP00000401060.1Re-query CCDS DB by Nucleotide ID:ENST00000455697Re-query CCDS DB by Protein ID:ENSP00000401060
Original member Current member EBI ENST00000548696.6 ENSP00000448359.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000548696.6Link to Ensembl Protein Viewer:ENSP00000448359.1Re-query CCDS DB by Nucleotide ID:ENST00000548696Re-query CCDS DB by Protein ID:ENSP00000448359
Original member Current member EBI ENST00000552240.6 ENSP00000449819.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000552240.6Link to Ensembl Protein Viewer:ENSP00000449819.1Re-query CCDS DB by Nucleotide ID:ENST00000552240Re-query CCDS DB by Protein ID:ENSP00000449819
Original member Current member EBI ENST00000639589.1 ENSP00000491051.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000639589.1Link to Ensembl Protein Viewer:ENSP00000491051.1Re-query CCDS DB by Nucleotide ID:ENST00000639589Re-query CCDS DB by Protein ID:ENSP00000491051
Original member Current member EBI ENST00000640132.1 ENSP00000491228.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000640132.1Link to Ensembl Protein Viewer:ENSP00000491228.1Re-query CCDS DB by Nucleotide ID:ENST00000640132Re-query CCDS DB by Protein ID:ENSP00000491228
Original member Current member EBI ENST00000639566.1 ENSP00000492332.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000639566.1Link to Ensembl Protein Viewer:ENSP00000492332.1Re-query CCDS DB by Nucleotide ID:ENST00000639566Re-query CCDS DB by Protein ID:ENSP00000492332
Original member Current member EBI ENST00000639958.1 ENSP00000492644.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000639958.1Link to Ensembl Protein Viewer:ENSP00000492644.1Re-query CCDS DB by Nucleotide ID:ENST00000639958Re-query CCDS DB by Protein ID:ENSP00000492644
Original member Current member EBI ENST00000640055.1 ENSP00000492763.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000640055.1Link to Ensembl Protein Viewer:ENSP00000492763.1Re-query CCDS DB by Nucleotide ID:ENST00000640055Re-query CCDS DB by Protein ID:ENSP00000492763
Original member Current member NCBI NM_001144881.2 NP_001138353.1 Accepted alive Link to Nucleotide Sequence:NM_001144881.2Link to Protein Sequence:NP_001138353.1Re-query CCDS DB by Nucleotide ID:NM_001144881Re-query CCDS DB by Protein ID:NP_001138353Link to BLAST:NP_001138353.1
Original member Current member NCBI NM_001144882.2 NP_001138354.1 Accepted alive Link to Nucleotide Sequence:NM_001144882.2Link to Protein Sequence:NP_001138354.1Re-query CCDS DB by Nucleotide ID:NM_001144882Re-query CCDS DB by Protein ID:NP_001138354Link to BLAST:NP_001138354.1
Original member Current member NCBI NM_001144883.2 NP_001138355.1 Accepted alive Link to Nucleotide Sequence:NM_001144883.2Link to Protein Sequence:NP_001138355.1Re-query CCDS DB by Nucleotide ID:NM_001144883Re-query CCDS DB by Protein ID:NP_001138355Link to BLAST:NP_001138355.1
Original member Current member NCBI NM_153026.3 NP_694571.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153026.3Link to Protein Sequence:NP_694571.2Re-query CCDS DB by Nucleotide ID:NM_153026Re-query CCDS DB by Protein ID:NP_694571Link to BLAST:NP_694571.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138353.1 831 Q96MT3 831 100% 0 0
NP_001138354.1 831 Q96MT3 831 100% 0 0
NP_001138355.1 831 Q96MT3 831 100% 0 0
NP_694571.2 831 Q96MT3 831 100% 0 0

Chromosomal Locations for CCDS 8742.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 42459809 42460665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 42464395 42465258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 42466194 42466380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 42468626 42468829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 42469450 42469587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 42470246 42470359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 42472385 42472516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2496 nt):
ATGCCTTTGGAGATGGAGCCCAAGATGAGCAAACTGGCCTTTGGCTGTCAGAGAAGTTCCACATCAGATG
ATGACTCTGGCTGTGCATTGGAGGAGTACGCCTGGGTCCCCCCGGGCCTGAGACCAGAGCAGATCCAGCT
CTATTTTGCTTGCTTACCAGAGGAAAAAGTTCCTTACGTTAACAGCCCCGGAGAGAAGCATCGGATTAAA
CAGCTTTTGTACCAGTTACCACCACATGATAATGAGGTACGGTATTGCCAGTCTTTGAGTGAAGAGGAGA
AAAAAGAGTTGCAGGTGTTCAGTGCTCAGCGGAAGAAAGAAGCACTGGGAAGAGGAACAATTAAGCTTCT
GTCCAGAGCAGTCATGCATGCTGTGTGTGAGCAGTGTGGTTTGAAGATAAATGGAGGTGAAGTTGCAGTG
TTCGCCTCCCGTGCGGGCCCTGGTGTGTGCTGGCACCCATCCTGTTTTGTCTGTTTCACGTGTAATGAGC
TGCTGGTCGACCTCATCTATTTTTATCAGGATGGAAAAATTCACTGTGGCAGGCACCATGCAGAACTGCT
CAAACCACGGTGCTCAGCATGTGACGAGATAATTTTTGCTGATGAGTGCACAGAAGCTGAGGGTCGCCAT
TGGCACATGAAACACTTCTGCTGCCTTGAGTGTGAAACGGTCCTGGGAGGACAGAGGTATATCATGAAGG
ACGGCCGCCCCTTCTGCTGTGGCTGTTTTGAGTCTCTCTATGCGGAGTACTGTGAAACCTGTGGGGAACA
TATTGGTGTGGACCATGCACAGATGACCTATGACGGGCAGCACTGGCACGCCACGGAAGCCTGCTTTTCT
TGTGCCCAGTGTAAAGCCTCTTTGTTGGGATGTCCCTTCCTTCCCAAACAGGGTCAGATTTACTGCTCAA
AAACGTGCAGTCTTGGTGAAGACGTCCATGCCTCTGATTCTTCCGACTCTGCATTTCAGTCAGCTCGATC
AAGAGACTCCCGAAGAAGTGTCCGAATGGGCAAGAGCAGCCGGTCAGCAGATCAGTGTAGACAGTCTCTC
CTCTTATCGCCTGCTCTGAACTACAAGTTTCCTGGCCTCTCAGGCAATGCTGATGACACCCTTTCTCGAA
AATTGGATGATCTGAGTCTCTCCAGACAAGGAACAAGTTTTGCCAGTGAAGAATTTTGGAAAGGCAGAGT
AGAGCAGGAAACTCCAGAAGACCCTGAAGAATGGGCTGATCATGAAGATTATATGACGCAGCTCCTCCTC
AAGTTTGGTGATAAAAGCCTCTTTCAGCCACAGCCCAATGAGATGGATATTCGAGCCAGTGAGCACTGGA
TATCTGATAACATGGTTAAAAGTAAGACCGAGTTAAAGCAAAATAACCAGAGCCTTGCAAGTAAAAAATA
CCAGTCTGATATGTACTGGGCACAGTCACAAGATGGACTGGGCGATTCTGCTTATGGCAGCCACCCAGGC
CCTGCAAGCAGTAGAAGGCTTCAGGAATTGGAACTGGACCATGGGGCTTCAGGGTATAATCATGATGAAA
CACAGTGGTATGAAGATTCCCTGGAGTGTCTGTCAGACCTGAAACCAGAGCAAAGTGTTCGGGATTCGAT
GGATTCTTTGGCATTGTCCAATATCACAGGGGCTTCGGTGGATGGAGAAAACAAGCCAAGGCCATCATTG
TATTCTCTGCAAAATTTTGAGGAGATGGAAACAGAAGATTGTGAGAAGATGAGCAATATGGGAACTTTGA
ACTCTTCCATGCTGCACAGGAGTGCAGAGTCCTTAAAGAGTCTAAGTTCAGAGTTGTGTCCAGAGAAAAT
CCTGCCTGAAGAGAAGCCAGTACATCTGCCAGTGCTCAGAAGGTCCAAGTCTCAATCCAGACCCCAGCAG
GTCAAGTTTTCTGATGATGTCATTGACAATGGGAACTATGACATTGAAATCCGGCAGCCTCCGATGAGTG
AAAGGACTCGGAGACGCGTCTACAATTTTGAAGAGAGGGGATCCAGGTCTCATCACCACCGCCGCCGGAG
AAGTAGAAAGTCCCGCTCCGACAATGCCCTGAATCTTGTTACAGAAAGAAAATACTCTCCCAAGGACAGA
CTGCGGCTGTACACCCCCGATAACTATGAGAAATTTATACAGAATAAAAGTGCCCGGGAGATCCAAGCAT
ACATCCAGAATGCTGATCTCTACGGACAGTACGCCCATGCCACTTCCGATTATGGCCTGCAGAACCCAGG
AATGAATCGGTTTCTGGGACTCTACGGCGAGGATGATGATTCCTGGTGTTCTTCCTCCTCCTCCTCTTCC
GACTCGGAAGAAGAAGGATATTTTCTTGGACAACCAATCCCTCAACCCCGGCCACAGAGATTTGCCTACT
ATACAGATGACCTTTCTAGTCCACCATCTGCACTTCCCACCCCTCAGTTTGGTCAGAGGACAACAAAATC
CAAGAAGAAAAAGGGACACAAGGGCAAAAATTGTATTATTTCTTAA

Translation (831 aa):
MPLEMEPKMSKLAFGCQRSSTSDDDSGCALEEYAWVPPGLRPEQIQLYFACLPEEKVPYVNSPGEKHRIK
QLLYQLPPHDNEVRYCQSLSEEEKKELQVFSAQRKKEALGRGTIKLLSRAVMHAVCEQCGLKINGGEVAV
FASRAGPGVCWHPSCFVCFTCNELLVDLIYFYQDGKIHCGRHHAELLKPRCSACDEIIFADECTEAEGRH
WHMKHFCCLECETVLGGQRYIMKDGRPFCCGCFESLYAEYCETCGEHIGVDHAQMTYDGQHWHATEACFS
CAQCKASLLGCPFLPKQGQIYCSKTCSLGEDVHASDSSDSAFQSARSRDSRRSVRMGKSSRSADQCRQSL
LLSPALNYKFPGLSGNADDTLSRKLDDLSLSRQGTSFASEEFWKGRVEQETPEDPEEWADHEDYMTQLLL
KFGDKSLFQPQPNEMDIRASEHWISDNMVKSKTELKQNNQSLASKKYQSDMYWAQSQDGLGDSAYGSHPG
PASSRRLQELELDHGASGYNHDETQWYEDSLECLSDLKPEQSVRDSMDSLALSNITGASVDGENKPRPSL
YSLQNFEEMETEDCEKMSNMGTLNSSMLHRSAESLKSLSSELCPEKILPEEKPVHLPVLRRSKSQSRPQQ
VKFSDDVIDNGNYDIEIRQPPMSERTRRRVYNFEERGSRSHHHRRRRSRKSRSDNALNLVTERKYSPKDR
LRLYTPDNYEKFIQNKSAREIQAYIQNADLYGQYAHATSDYGLQNPGMNRFLGLYGEDDDSWCSSSSSSS
DSEEEGYFLGQPIPQPRPQRFAYYTDDLSSPPSALPTPQFGQRTTKSKKKKGHKGKNCIIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH