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Report for CCDS87502.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87502.1 Public Homo sapiens 7 IKZF1 24 110 108 CCDS HistoryNCBI Gene:10320Re-query CCDS DB by CCDS ID:87502.1Re-query CCDS DB by GeneID:10320See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87502.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000646110.1 ENSP00000493696.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000646110.1Link to Ensembl Protein Viewer:ENSP00000493696.1Re-query CCDS DB by Nucleotide ID:ENST00000646110Re-query CCDS DB by Protein ID:ENSP00000493696
Original member Current member EBI ENST00000492782.6 ENSP00000494180.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000492782.6Link to Ensembl Protein Viewer:ENSP00000494180.1Re-query CCDS DB by Nucleotide ID:ENST00000492782Re-query CCDS DB by Protein ID:ENSP00000494180
Original member Current member NCBI NM_001291846.2 NP_001278775.1 Accepted alive Link to Nucleotide Sequence:NM_001291846.2Link to Protein Sequence:NP_001278775.1Re-query CCDS DB by Nucleotide ID:NM_001291846Re-query CCDS DB by Protein ID:NP_001278775Link to BLAST:NP_001278775.1
Original member Current member NCBI NM_001291847.2 NP_001278776.1 Accepted alive Link to Nucleotide Sequence:NM_001291847.2Link to Protein Sequence:NP_001278776.1Re-query CCDS DB by Nucleotide ID:NM_001291847Re-query CCDS DB by Protein ID:NP_001278776Link to BLAST:NP_001278776.1

Chromosomal Locations for CCDS 87502.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 50319062 50319101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 50327638 50327757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 50368006 50368065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 50369522 50369535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (234 nt):
ATGGATGCTGATGAGGGTCAAGACATGTCCCAAGTTTCAGGGAAGGAAAGCCCCCCTGTAAGCGATACTC
CAGATGAGGGCGATGAGCCCATGCCGATCCCCGAGGACCTCTCCACCACCTCGGGAGGACAGCAAAGCTC
CAAGAGTGACAGAGTCGTGGTTACATATGGGGCTGATGACTTTAGGGATTTCCATGCAATAATTCCCAAA
TCTTTCTCTCTGTTGGAATTGTGA

Translation (77 aa):
MDADEGQDMSQVSGKESPPVSDTPDEGDEPMPIPEDLSTTSGGQQSSKSDRVVVTYGADDFRDFHAIIPK
SFSLLEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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