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Report for CCDS8758.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8758.1 Public Homo sapiens 12 TMEM106C 24 110 108 CCDS HistoryNCBI Gene:79022Re-query CCDS DB by CCDS ID:8758.1Re-query CCDS DB by GeneID:79022See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8758.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000429772.7 ENSP00000400471.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000429772.7Link to Ensembl Protein Viewer:ENSP00000400471.2Re-query CCDS DB by Nucleotide ID:ENST00000429772Re-query CCDS DB by Protein ID:ENSP00000400471
Original member Current member EBI ENST00000552561.5 ENSP00000446657.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000552561.5Link to Ensembl Protein Viewer:ENSP00000446657.1Re-query CCDS DB by Nucleotide ID:ENST00000552561Re-query CCDS DB by Protein ID:ENSP00000446657
Original member Current member NCBI NM_001143842.2 NP_001137314.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001143842.2Link to Protein Sequence:NP_001137314.1Re-query CCDS DB by Nucleotide ID:NM_001143842Re-query CCDS DB by Protein ID:NP_001137314Link to BLAST:NP_001137314.1
Original member Current member NCBI NM_024056.4 NP_076961.1 Accepted alive Link to Nucleotide Sequence:NM_024056.4Link to Protein Sequence:NP_076961.1Re-query CCDS DB by Nucleotide ID:NM_024056Re-query CCDS DB by Protein ID:NP_076961Link to BLAST:NP_076961.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137314.1 250 Q9BVX2-1 250 100% 0 0
NP_076961.1 250 Q9BVX2-1 250 100% 0 0

Chromosomal Locations for CCDS 8758.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 47964237 47964423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47965282 47965345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47965838 47965997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47966089 47966229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47966683 47966732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47967208 47967261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47968133 47968229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGGGGTCTCAGCATTCCGCTGCTGCTCGCCCCTCCTCCTGCAGGCGAAAGCAAGAAGATGACAGGGACG
GTTTGCTGGCTGAACGAGAGCAGGAAGAAGCCATTGCTCAGTTCCCATATGTGGAATTCACCGGGAGAGA
TAGCATCACCTGTCTCACGTGCCAGGGGACAGGCTACATTCCAACAGAGCAAGTAAATGAGTTGGTGGCT
TTGATCCCACACAGTGATCAGAGATTGCGCCCTCAGCGAACTAAGCAATATGTCCTCCTGTCCATCCTGC
TTTGTCTCCTGGCATCTGGTTTGGTGGTTTTCTTCCTGTTTCCGCATTCAGTCCTTGTGGATGATGACGG
CATCAAAGTGGTGAAAGTCACATTTAATAAGCAAGACTCCCTTGTAATTCTCACCATCATGGCCACCCTG
AAAATCAGGAACTCCAACTTCTACACGGTGGCAGTGACCAGCCTGTCCAGCCAGATTCAGTACATGAACA
CAGTGGTCAGTACATATGTGACTACTAACGTCTCCCTTATTCCACCTCGGAGTGAGCAACTGGTGAATTT
TACCGGGAAGGCCGAGATGGGAGGACCGTTTTCCTATGTGTACTTCTTCTGCACGGTACCTGAGATCCTG
GTGCACAACATAGTGATCTTCATGCGAACTTCAGTGAAGATTTCATACATTGGCCTCATGACCCAGAGCT
CCTTGGAGACACATCACTATGTGGATTGTGGAGGAAATTCCACAGCTATTTAA

Translation (250 aa):
MGSQHSAAARPSSCRRKQEDDRDGLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYIPTEQVNELVA
LIPHSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKVVKVTFNKQDSLVILTIMATL
KIRNSNFYTVAVTSLSSQIQYMNTVVSTYVTTNVSLIPPRSEQLVNFTGKAEMGGPFSYVYFFCTVPEIL
VHNIVIFMRTSVKISYIGLMTQSSLETHHYVDCGGNSTAI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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