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Report for CCDS87607.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87607.1 Public Homo sapiens 8 SPIDR 24 110 108 CCDS HistoryNCBI Gene:23514Re-query CCDS DB by CCDS ID:87607.1Re-query CCDS DB by GeneID:23514See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87607.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000517693.5 ENSP00000427889.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000517693.5Link to Ensembl Protein Viewer:ENSP00000427889.1Re-query CCDS DB by Nucleotide ID:ENST00000517693Re-query CCDS DB by Protein ID:ENSP00000427889
Original member Current member NCBI NM_001352960.1 NP_001339889.1 Accepted alive Link to Nucleotide Sequence:NM_001352960.1Link to Protein Sequence:NP_001339889.1Re-query CCDS DB by Nucleotide ID:NM_001352960Re-query CCDS DB by Protein ID:NP_001339889Link to BLAST:NP_001339889.1

Chromosomal Locations for CCDS 87607.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 47673832 47673941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47700403 47700490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47701721 47701864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47701956 47702015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47712662 47712872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47713489 47713641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47727200 47727293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47728933 47729047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47729412 47729465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47735307 47735450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1173 nt):
ATGTTCGGTGAAGTGCACTTGGAGTTCACCATGTCGAAGGCAAGACAGTTGGAAGGGAAGTCTTGCAGCC
TGGTGGGAATGAAGGTTCTACAGAAAGTCACCAGAGGAAGGACAGCGGGGATTTTCAGTTTGATTGACAC
CCTGTGGCCCCCAGCGATACCTCTGAAAACACCTGGCCGCGACCAGCCCTGTGAAGAGATAAAAACTCAT
CTGCCTCCTCCAGCCTTGTGTTACATCCTCACAGCTCATCCAAATCTGGGACAAATTGATATAATTGACG
AAGACCCCATTTATAAGCTTTACCAGCCTCCAGTTACCCGCTGCTTAAGAGACATTCTCCAGATGAATGA
TCTTGGTACCCGTTGCAGTTTCTATGCCACGGTGATTTACCAAAAACCACAGCTGAAGAGTCTGCTGCTT
CTGGAGCAAAGGGAGATCTGGCTGCTAGTGACCGATGTCACTCTGCAAACGAAGGAGGAGAGAGACCCCA
GGCTCCCCAAAACCCTGCTGGTCTATGTGGCCCCCTTGTGTGTGCTGGGCTCTGAAGTCCTGGAGGCACT
CGCTGGGGCTGCCCCTCACAGCCTCTTCTTCAAGGACGCTCTCCGTGACCAGGGTCGGATTGTTTGTGCT
GAACGAACTGTCCTCTTGCTTCAGAAGCCCCTTTTGAGTGTGGTCTCTGGTGCAAGTTCCTGTGAGCTGC
CTGGCCCGGTGATGCTCGACAGCCTGGACTCTGCAACACCTGTCAACTCCATCTGCAGTGTTCAAGGCAC
TGTGGTTGGCGTGGACGAGAGCACTGCTTTCTCATGGCCTGTGTGTGACATGTGTGGCAACGGGAGATTG
GAACAGAGGCCGGAAGACAGAGGCGCCTTTTCCTGTGGGGACTGCTCCCGGGTGGTCACATCTCCTGTTC
TCAAGAGGCACCTGCAGGTCTTCCTGGACTGCCGCTCAAGACCGCAGTGCAGAGTGAAGGTCAAGCTGTT
GCAGCGCAGCATTTCCTCCCTGCTGAGGTTTGCCGCCGGTGAAGATGGGAGCTACGAAGTGAAGAGTGTC
CTCGGAAAGGAAGTGGGGTTGTTAAATTGTTTTGTCCAGTCCGTAACCGCCCACCCGACCAGCTGCATTG
GATTGGAGGAAATCGAGCTTCTGAGTGCAGGAGGGGCCTCTGCAGAACACTAG

Translation (390 aa):
MFGEVHLEFTMSKARQLEGKSCSLVGMKVLQKVTRGRTAGIFSLIDTLWPPAIPLKTPGRDQPCEEIKTH
LPPPALCYILTAHPNLGQIDIIDEDPIYKLYQPPVTRCLRDILQMNDLGTRCSFYATVIYQKPQLKSLLL
LEQREIWLLVTDVTLQTKEERDPRLPKTLLVYVAPLCVLGSEVLEALAGAAPHSLFFKDALRDQGRIVCA
ERTVLLLQKPLLSVVSGASSCELPGPVMLDSLDSATPVNSICSVQGTVVGVDESTAFSWPVCDMCGNGRL
EQRPEDRGAFSCGDCSRVVTSPVLKRHLQVFLDCRSRPQCRVKVKLLQRSISSLLRFAAGEDGSYEVKSV
LGKEVGLLNCFVQSVTAHPTSCIGLEEIELLSAGGASAEH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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