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Report for CCDS87685.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87685.1 Public Homo sapiens 9 RC3H2 24 110 108 CCDS HistoryNCBI Gene:54542Re-query CCDS DB by CCDS ID:87685.1Re-query CCDS DB by GeneID:54542See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87685.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335387.9 ENSP00000335150.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000335387.9Link to Ensembl Protein Viewer:ENSP00000335150.5Re-query CCDS DB by Nucleotide ID:ENST00000335387Re-query CCDS DB by Protein ID:ENSP00000335150
Original member Current member NCBI NM_001354486.2 NP_001341415.1 Accepted alive Link to Nucleotide Sequence:NM_001354486.2Link to Protein Sequence:NP_001341415.1Re-query CCDS DB by Nucleotide ID:NM_001354486Re-query CCDS DB by Protein ID:NP_001341415Link to BLAST:NP_001341415.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001341415.1 506 Q9HBD1-3 506 99.8024% 0 1

Chromosomal Locations for CCDS 87685.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 122875173 122875368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122877471 122877583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122879755 122879873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122879993 122880125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122880594 122880794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122883204 122883379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122890312 122890545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122892909 122893026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122897279 122897509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1521 nt):
ATGCCTGTGCAGGCAGCTCAATGGACAGAATTTCTGTCCTGTCCAATCTGCTATAATGAATTTGATGAGA
ATGTGCACAAACCCATCAGTTTAGGTTGTTCACACACTGTTTGCAAGACCTGCTTGAATAAACTTCATCG
AAAAGCTTGTCCTTTTGACCAGACTGCCATCAACACAGATATTGATGTACTTCCTGTCAACTTCGCACTT
CTCCAGTTAGTTGGAGCCCAGGTACCAGATCATCAGTCAATTAAGTTAAGTAATCTAGGTGAGAATAAAC
ACTATGAGGTTGCAAAGAAATGCGTTGAGGATTTGGCACTCTACTTAAAACCACTAAGTGGAGGTAAAGG
TGTAGCTAGCTTGAACCAGAGTGCACTGAGCCGTCCAATGCAAAGGAAACTGGTGACACTTGTAAACTGT
CAACTGGTGGAGGAAGAAGGTCGTGTAAGAGCCATGCGAGCAGCTCGTTCCCTTGGAGAAAGAACTGTAA
CAGAACTGATATTACAGCACCAGAACCCTCAGCAGTTGTCTGCCAATCTATGGGCCGCTGTCAGGGCTCG
AGGATGCCAGTTTTTAGGGCCAGCTATGCAAGAAGAGGCCTTGAAGCTGGTGTTACTGGCATTAGAAGAT
GGTTCTGCCCTCTCAAGGAAAGTTCTGGTACTTTTTGTTGTGCAGAGACTAGAACCAAGATTTCCTCAGG
CATCAAAAACAAGTATTGGTCATGTTGTGCAACTACTGTATCGAGCTTCTTGTTTTAAGGTTACCAAAAG
AGATGAAGACTCTTCCCTAATGCAGCTGAAGGAGGAATTTCGGAGTTATGAAGCATTACGCAGAGAACAT
GATGCCCAAATTGTTCATATTGCCATGGAAGCAGGACTCCGTATTTCACCTGAACAGTGGTCCTCTCTTT
TGTATGGTGATTTGGCTCATAAATCACACATGCAGTCTATCATTGATAAGCTACAGTCTCCAGAGTCATT
TGCAAAGAGTGTCCAGGAATTGACAATTGTTTTGCAACGAACAGGTGACCCAGCTAACTTAAATAGACTG
AGGCCTCATTTAGAGCTTCTTGCAAACATAGACCCTAATCCAGACGCTGTTTCACCAACTTGGGAGCAGC
TGGAAAATGCAATGGTAGCTGTTAAAACAGTAGTTCATGGCCTTGTGGACTTCATACAAAATTATAGTAG
AAAAGGCCATGAGACCCCTCAGCCTCAGCCAAACAGCAAATACAAGACTAGCATGTGCCGAGATTTGCGA
CAGCAAGGGGGTTGTCCACGAGGAACAAATTGTACATTTGCCCATTCTCAGGAAGAGCTTGAAAAGTGTA
ACCCCCGTGGACTATATCTTCATTGTTGTCTCCTTTCCTCAGTGGCTAGCTTGGGCACTGTACATAATGA
GCTCTACAAGCAGCAGCATTGTGATAGAGAGAAGATAAGTGTGTGTGCAGTGAAAAGAGCAGAAACATGC
TTCTCTTCTCAGTTTTTTTCCCCACTTGAAGTGCCTAGAGAAGAGGATTAA

Translation (506 aa):
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTDIDVLPVNFAL
LQLVGAQVPDHQSIKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGVASLNQSALSRPMQRKLVTLVNC
QLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANLWAAVRARGCQFLGPAMQEEALKLVLLALED
GSALSRKVLVLFVVQRLEPRFPQASKTSIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREH
DAQIVHIAMEAGLRISPEQWSSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRL
RPHLELLANIDPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHSQEELEKCNPRGLYLHCCLLSSVASLGTVHNELYKQQHCDREKISVCAVKRAETC
FSSQFFSPLEVPREED


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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