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Report for CCDS87713.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87713.1 Public Homo sapiens 9 LHX3 24 110 108 CCDS HistoryNCBI Gene:8022Re-query CCDS DB by CCDS ID:87713.1Re-query CCDS DB by GeneID:8022See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87713.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000619587.1 ENSP00000483080.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000619587.1Link to Ensembl Protein Viewer:ENSP00000483080.1Re-query CCDS DB by Nucleotide ID:ENST00000619587Re-query CCDS DB by Protein ID:ENSP00000483080
Original member Current member NCBI NM_001363746.1 NP_001350675.1 Accepted alive Link to Nucleotide Sequence:NM_001363746.1Link to Protein Sequence:NP_001350675.1Re-query CCDS DB by Nucleotide ID:NM_001363746Re-query CCDS DB by Protein ID:NP_001350675Link to BLAST:NP_001350675.1

Chromosomal Locations for CCDS 87713.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 136197325 136197743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136198652 136198820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136198908 136199059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136199678 136199880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136200582 136200753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136201165 136201210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGACGCTTAACATGAAGGAGACCCGATGGGGTGCCCCAGCTCCAGAGATCCCGCTGTGCGCTGGCTGTG
ACCAGCACATCCTGGACCGCTTCATCCTCAAGGCTCTGGACCGCCACTGGCACAGCAAGTGTCTCAAGTG
CAGCGACTGCCACACGCCACTGGCCGAGCGCTGCTTCAGCCGAGGGGAGAGCGTTTACTGCAAGGACGAC
TTTTTCAAGCGCTTCGGGACCAAGTGCGCCGCGTGCCAGCTGGGCATCCCGCCCACGCAGGTGGTGCGCC
GCGCCCAGGACTTCGTGTACCACCTGCACTGCTTTGCCTGCGTCGTGTGCAAGCGGCAGCTGGCCACGGG
CGACGAGTTCTACCTCATGGAGGACAGCCGGCTCGTGTGCAAGGCGGACTACGAAACCGCCAAGCAGCGA
GAGGCCGAGGCCACGGCCAAGCGGCCGCGCACGACCATCACCGCCAAGCAGCTGGAGACGCTGAAGAGCG
CTTACAACACCTCGCCCAAGCCGGCGCGCCACGTGCGCGAGCAGCTCTCGTCCGAGACGGGCCTGGACAT
GCGCGTGGTGCAGGTTTGGTTCCAGAACCGCCGGGCCAAGGAGAAGAGGCTGAAGAAGGACGCCGGCCGG
CAGCGCTGGGGGCAGTATTTCCGCAACATGAAGCGCTCCCGCGGCGGCTCCAAGTCGGACAAGGACAGCG
TTCAGGAGGGGCAGGACAGCGACGCTGAGGTCTCCTTCCCCGATGAGCCTTCCTTGGCGGAAATGGGCCC
GGCCAATGGCCTCTACGGGAGCTTGGGGGAACCCACCCAGGCCTTGGGCCGGCCCTCGGGAGCCCTGGGC
AACTTCTCCCTGGAGCATGGAGGCCTGGCAGGCCCAGAGCAGTACCGAGAGCTGCGTCCCGGCAGCCCCT
ACGGTGTCCCCCCATCCCCCGCCGCCCCGCAGAGCCTCCCTGGCCCCCAGCCCCTCCTCTCCAGCCTGGT
GTACCCAGACACCAGCTTGGGCCTTGTGCCCTCGGGAGCCCCCGGCGGGCCCCCACCCATGAGGGTGCTG
GCAGGGAACGGACCCAGTTCTGACCTATCCACGGGGAGCAGCGGGGGTTACCCCGACTTCCCTGCCAGCC
CCGCCTCCTGGCTGGATGAGGTAGACCACGCTCAGTTCTGA

Translation (386 aa):
MTLNMKETRWGAPAPEIPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDD
FFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQR
EAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGR
QRWGQYFRNMKRSRGGSKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGALG
NFSLEHGGLAGPEQYRELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYPDTSLGLVPSGAPGGPPPMRVL
AGNGPSSDLSTGSSGGYPDFPASPASWLDEVDHAQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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