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Report for CCDS87759.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87759.1 Public Homo sapiens X NHSL2 24 110 108 CCDS HistoryNCBI Gene:340527Re-query CCDS DB by CCDS ID:87759.1Re-query CCDS DB by GeneID:340527See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87759.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000633930.2 ENSP00000488668.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000633930.2Link to Ensembl Protein Viewer:ENSP00000488668.1Re-query CCDS DB by Nucleotide ID:ENST00000633930Re-query CCDS DB by Protein ID:ENSP00000488668
Original member Current member NCBI NM_001013627.3 NP_001013649.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001013627.3Link to Protein Sequence:NP_001013649.2Re-query CCDS DB by Nucleotide ID:NM_001013627Re-query CCDS DB by Protein ID:NP_001013649Link to BLAST:NP_001013649.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013649.2 1225 Q5HYW2-1 1225 100% 0 0

Chromosomal Locations for CCDS 87759.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 71911088 71911367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72132079 72132234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72134091 72134218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72134509 72134704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72137094 72137225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72138441 72140771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72142232 72142364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72143253 72143574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3678 nt):
ATGCCGTTCTACAGGCGCACGGTGGTACCCCAGCGCCTGTGCCCGCGCAACCCGCCGCAGCAGCTGGCGG
AG
CTCCGCGACGTGAGCCACCTGGCAGCGCTCAGCCTGCTCCGGCAGCTCGCCGACCTCTGTGGCCACTC
G
TTGGCTCTGCTCGAGGACCTCGAGGGGCACCTGCTGGCCCTGGGGCGCCGCACAGACAGCCTGTACCGG
CGC
ACCGTGCGCCTCCGCCGCCGCCTTCCCTGCCGCCTGCTTGGCCCGGAGGAGGACGAGGAAGAGCTAG
CT
GCAGCTAACTCGGGTCGGGAAAATGCGACAGCGACTGCCCACTCGAGGTCGTCATGGCGACAGCCAGT
G
AACGTGTTCCTCTCCTCGGGCAGGCCCCCGAGTGTAGAGGAGCTGCTTCGGGAGGCGCAGCTCAATCTC
CAG
AGCCTGTTGCAAGAAGAATATGAGGAACAGTACTCGGAGGCCAGACTTGTGGGGCAGACCTTCCGCT
CT
TCTGATGAGGCCACTAAGCCCACCCCCAACCCAAGGCCCCAGTCTGCCAGGCGTCTGGAGTTTATATT
G
ATGCCTACAAAACGGCAGCTGAGCGAGGATGAGACTACCACCCAGGGTGTGAGGGCCCCCGAGGCCTCC
CTG
AGCCTGTCTACCACAGCCGACAAGCAAACTGCCTGGAATAGCCTTTTCCCTCTGCCCATCCTAGAGG
AG
AAGCGGTGGCCTCAGCTTTGCTCCACGCAGTCTGACATTGTGCCCATCAACATCTCTGGGCAGCAGTT
T
GATAAACATGCAAGTTTGCGACACTCGTTGTTTAACACAGAGACAGCCGTGAACCCCAAGTCCACCCTG
AGG
CGGAGGCGGACCATTATTGGATTCTCTAACTTTTCCCAGCGAGACCAAGGTCACAGCAACAGCCCAG
CA
GGCAGTGTGGCCCACTCTACCACCTCCGACATCAGGCCCAGTCACTCAGTTCCAGAAGGGGTTCATGG
A
AGAGTTGCAGTTGGTCAGGATGCTCGGTTCCCAAGTCTCACCTCGCCAGTACTGAGAACTCCTTCCAGT
GAG
CCGGACGAACCTCACCAGGCACGGAGTGGCCCAAACCCTCCTGGCATGGAGAGCATGGGAATGGTGT
AC
AGTGTCCCCAGTTCTTGCAATGGACCTACAGAATCAACCTTCTCCACTTCCTGGAAGGGAGATGCTTT
T
ACCTACATGACTCCAAGTGCCACCAGCCAGAGCAATCAAGTCAATGAAAATGGGAAAAATCCTTCCTGT
GGG
AATTCTTGGGTCTCTCTAAACAAAGTCCCACCTCTGGTTCCTAAGGAGGCTGCTACCCTCCTTGTCG
CT
CGTGATAACCCAGCAGGATGCAGTGGGTCAGCTGGCTACCCTGAGCGCCTTATTCAGCAAAGGCACAT
G
CCCGAAAGACCCTCCAAGATTGGCCTTCTGACCAGTGGGACCTCGAGGCTGGAGACAGGCCCCGGTGGG
GCC
AGCAGATTCCGGGAGCGGTCACTGTCTGTGCCCACAGACTCAGGCACCACAGATGTGGACTATGATG
AG
GAGCAGAAGGCCAATGAGGCCTGTGCCCTGCCTTTTGCCAGTACGAGCTCTGAGGGCAGTAACAGTGC
T
GACAACATTGCCTCCCTTAGTGCCCAGCAAGAGGCCCAGCACAGAAGGCAGAGGTCCAAGAGTATCTCA
CTT
AGGAAGGCCAAAAAGAAGCCTTCCCCACCCACACGCAGTGTCTCACTGGTCAAAGATGAGCCAGGCC
TC
TTGCCTGAAGGTGGGTCAGCACTACCCAAGGACCAGAGGCCCAAGAGCCTTTGCCTCTCCTTGGAACA
T
CAAGGACATCACTCGTCCCACCCAGATGCTCAGGGTCACCCAGCTATTCCAAACCACAAAGATCCAGAA
AGT
ACACAATTCTCCCACCACTGGTATCTTACTGACTGGAAGTCTGGTGACACCTACCAATCCCTGTCCA
GC
TCCAGCACTGCCACTGGCACCACAGTCATTGAGTGCACCCAAGTTCAGGGCAGCTCAGAGTCTCTTGC
C
TCACCTTCCACCTCCAGAGCCACTACACCTTCCCAACTCTCCATTGAAGTGGAGGCCAGGGAGATATCA
TCC
CCGGGAAGGCCCCCTGGACTGATGTCACCCTCCAGTGGCTACTCCAGCCAGTCGGAAACACCAACAC
CC
ACTGTTTCCATGTCCCTGACCCTGGGCCACTTACCCCCTCCAAGCAGCAGTGTCCGGGTACGTCCAGT
G
GTACCTGAGAGGAAGTCATCACTACCCCCGACGTCACCAATGGAGAAATTTCCCAAGTCACGGCTATCA
TTT
GACCTACCACTGACCTCTTCACCCAACCTGGATCTGTCTGGGATGAGTATCTCCATCCGAAGCAAAA
CT
AAGGTGAGTCGGCACCACTCAGAGACAAATTTTGGCGTCAAGCTGGCCCAGAAAACTAATCCCAACCA
G
CCAATCATGCCTATGGTTACTCAGTCCGACCTACGTTCTGTTCGCCTGAGGTCGGTCAGCAAGTCTGAG
CCG
GAAGATGATATTGAGAGCCCTGAGTATGCCGAGGAACCCAGAGCAGAAGAAGTCTTCACCTTGCCAG
AG
AGAAAGACAAAACCTCCCGTAGCTGAGAAGCCTCCGGTGGCCCGGAGGCCTCCAAGCTTGGTCCACAA
G
CCACCATCTGTTCCTGAGGAGTATGCACTAACTTCACCAACCTTGGCTATGCCCCCCAGGAGCTCAATT
CAA
CATGCGAGACCACTCCCTCAAGACAGCTACACGGTAGTGCGGAAACCAAAGCCCTCCAGCTTCCCAG
AT
GGCAGAAGCCCAGGGGAGTCAACAGCACCCTCATCTCTTGTTTTCACGCCTTTTGCCAGTTCCTCTGA
T
GCTTTCTTCTCAGGAACACAGCAGCCTCCCCAGGGAAGTGTAGAGGACGAGGGCCCCAAGGTGAGGGTT
CTG
CCTGAAAGAATTAGCCTCCAGAGCCAGGAAGAAGCTGAGAAAAAGAAAGGCAAGATTCCACCTCCCG
TA
CCAAAAAAACCCAGCGTGCTGTACCTGCCTCTCACTTCTCCCACAGCTCAAATGGAGGCCTATGTGGC
A
GAACCAAGGCTGCCTCTCAGCCCCATCATCACCCTGGAGGAAGACACCAAGTGTCCCGCCACCGGCGAT
GAC
CTGCAATCACTTGGTCAAAGGGTGACTTCAACTCCTCAGGCTGACAGTGAAAGGGAGGCAAGCCCTC
TG
GGGAGTTCTGTGGAACCAGGCACCGAAGAAAAAAGTTTAATCAGTGATAAAACAGCTGAATGGATTGC
A
GAGGATGATGATGACGTGTTTGTGGCTTCACGCACAACTGAAGATTTATTTACTGTGATACACAGGTCC
AAA
AGGAAGCTGCTCGGCTGGAAGGAACCTGGTGAGGCCTTTGTGGGTGGCAGAACGAGTTCCCACTCAC
CA
ATAAAGAACACAGCTGAGTCTCCAATCAGTGAGTCTACCGCCACTGCAGGGTCAGGCAGCAGTGCCAA
C
CTAGATGCTGGCAGAAATGACGATTTCAAGGCCTTGCTACAGAAGAAGGGAAGTAAGGCAACTCCAAGG
TCT
CGTCCCTCAGCAGCTGAACTTCTGAAGACCACTAACCCACTGGCTCGGAGAATTATTGCACAATTTT
CA
AAAGACTATGAAACCACCGATAACCCCAGTACCTAA


Translation (1225 aa):
MPFYRRTVVPQRLCPRNPPQQLAELRDVSHLAALSLLRQLADLCGHSLALLEDLEGHLLALGRRTDSLYR
R
TVRLRRRLPCRLLGPEEDEEEL
AAANSGRENATATAHSRSSWRQPVNVFLSSGRPPSVEELLREAQLNL
Q
SLLQ
EEYEEQYSEARLVGQTFRSSDEATKPTPNPRPQSARRLEFILMPTKRQLSEDETTTQGVRAPEAS
L
SLSTTADKQTAWNSLFPLPILEEKRWPQLCSTQSDIVPINIS
GQQFDKHASLRHSLFNTETAVNPKSTL
R
RRRTIIGFSNFSQRDQ
GHSNSPAGSVAHSTTSDIRPSHSVPEGVHGRVAVGQDARFPSLTSPVLRTPSS
E
PDEPHQARSGPNPPGMESMGMVYSVPSSCNGPTESTFSTSWKGDAFTYMTPSATSQSNQVNENGKNPSC
G
NSWVSLNKVPPLVPKEAATLLVARDNPAGCSGSAGYPERLIQQRHMPERPSKIGLLTSGTSRLETGPGG
A
SRFRERSLSVPTDSGTTDVDYDEEQKANEACALPFASTSSEGSNSADNIASLSAQQEAQHRRQRSKSIS
L
RKAKKKPSPPTRSVSLVKDEPGLLPEGGSALPKDQRPKSLCLSLEHQGHHSSHPDAQGHPAIPNHKDPE
S
TQFSHHWYLTDWKSGDTYQSLSSSSTATGTTVIECTQVQGSSESLASPSTSRATTPSQLSIEVEAREIS
S
PGRPPGLMSPSSGYSSQSETPTPTVSMSLTLGHLPPPSSSVRVRPVVPERKSSLPPTSPMEKFPKSRLS
F
DLPLTSSPNLDLSGMSISIRSKTKVSRHHSETNFGVKLAQKTNPNQPIMPMVTQSDLRSVRLRSVSKSE
P
EDDIESPEYAEEPRAEEVFTLPERKTKPPVAEKPPVARRPPSLVHKPPSVPEEYALTSPTLAMPPRSSI
Q
HARPLPQDSYTVVRKPKPSSFPDGRSPGESTAPSSLVFTPFASSSDAFFSGTQQPPQGSVEDEGPKVRV
L
PERISLQSQEEAEKKKGKIPPPVPKKPSVLYLPLTSPTAQMEAYVAEPRLPLSPIITLEEDTKCPATGD
D
LQSLGQRVTSTPQADSEREASPL
GSSVEPGTEEKSLISDKTAEWIAEDDDDVFVASRTTEDLFTVIHRS
K
RKLLGWKEPGEAFVGGRTSSHSPIKNTAESPISESTATAGSGSSANLDAGRNDDFKALLQKKGSKATPR
S
RPSAAELLKTTNPLARRIIAQFSKDYETTDNPST




Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser