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Report for CCDS8807.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8807.1 Public Homo sapiens 12 CSRNP2 24 110 108 CCDS HistoryNCBI Gene:81566Re-query CCDS DB by CCDS ID:8807.1Re-query CCDS DB by GeneID:81566See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8807.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000228515.6 ENSP00000228515.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000228515.6Link to Ensembl Protein Viewer:ENSP00000228515.1Re-query CCDS DB by Nucleotide ID:ENST00000228515Re-query CCDS DB by Protein ID:ENSP00000228515
Original member Current member NCBI NM_030809.3 NP_110436.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030809.3Link to Protein Sequence:NP_110436.1Re-query CCDS DB by Nucleotide ID:NM_030809Re-query CCDS DB by Protein ID:NP_110436Link to BLAST:NP_110436.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_110436.1 543 Q9H175 543 100% 0 0

Chromosomal Locations for CCDS 8807.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 51063746 51064669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51067673 51067969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51073823 51074082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51076411 51076561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1632 nt):
ATGGATGCATTCACGGGCTCGGGTCTCAAGAGGAAGTTTGATGATGTGGATGTGGGCTCATCAGTTTCCA
ACTCAGATGATGAGATCTCCAGCAGTGATAGTGCTGACAGCTGCGACAGCCTCAATCCTCCTACCACTGC
CAGCTTCACACCCACATCCATCCTGAAGCGGCAGAAGCAGCTGCGGAGGAAGAATGTACGCTTTGACCAG
GTGACTGTATACTACTTTGCCCGGCGCCAAGGTTTTACCAGTGTGCCCAGCCAGGGTGGTAGCTCTCTGG
GCATGGCCCAGCGCCATAACTCTGTACGGAGCTATACACTCTGTGAGTTTGCCCAGGAACAGGAGGTGAA
CCATCGAGAGATTCTGCGTGAGCACCTGAAGGAAGAGAAACTCCATGCCAAGAAAATGAAGCTGACCAAG
AATGGGACAGTGGAGTCGGTGGAGGCTGATGGCCTGACGCTGGATGATGTGTCAGATGAAGATATTGATG
TGGAAAATGTGGAGGTGGATGATTACTTCTTCCTGCAGCCTCTGCCCACCAAACGGCGACGGGCCCTGCT
GAGGGCTTCTGGGGTCCACCGTATTGATGCTGAAGAGAAGCAAGAACTTCGAGCCATCCGCCTGTCACGG
GAAGAATGTGGTTGTGACTGCCGACTGTATTGTGACCCAGAAGCGTGTGCCTGCAGCCAGGCTGGGATTA
AATGCCAGGTGGATCGCATGTCCTTTCCATGTGGCTGCTCCCGGGATGGCTGTGGGAACATGGCAGGACG
CATTGAATTTAATCCAATCCGGGTCCGGACTCATTACCTCCACACCATTATGAAGCTGGAGCTGGAGAGC
AAGCGGCAGGTGAGCCGCCCAGCAGCCCCAGATGAGGAGCCCTCCCCGACTGCCAGTTGCAGCCTGACAG
GAGCACAGGGCTCTGAGACCCAGGACTTCCAGGAGTTCATTGCTGAGAATGAGACAGCAGTGATGCACCT
GCAGAGTGCAGAGGAACTGGAGCGGCTCAAGGCAGAAGAAGATTCCAGCGGCTCTAGTGCCAGCCTGGAC
TCGAGCATCGAGAGCCTGGGTGTGTGCATCCTAGAGGAGCCTCTGGCTGTCCCCGAAGAGCTGTGCCCAG
GCCTTACAGCCCCCATTCTCATCCAGGCTCAGCTGCCCCCAGGCTCCTCTGTCCTGTGTTTTACCGAGAA
CTCAGACCACCCAACTGCCTCAACGGTGAACAGCCCATCCTACTTGAACAGTGGGCCCCTGGTCTATTAT
CAAGTGGAGCAGAGGCCAGTCTTGGGAGTGAAAGGAGAGCCTGGTACGGAAGAAGGCTCAGCCTCTTTCC
CAAAGGAGAAGGATCTGAATGTCTTCTCTCTCCCTGTTACCTCACTCGTGGCTTGTAGCTCCACAGACCC
AGCTGCCCTCTGTAAATCAGAGGTGGGGAAAACACCCACCCTAGAAGCTCTATTGCCCGAAGATTGTAAC
CCTGAGGAGCCTGAAAATGAAGACTTCCACCCTTCCTGGTCCCCCTCAAGCCTCCCCTTCCGCACGGACA
ATGAAGAGGGCTGTGGGATGGTGAAGACCTCCCAGCAGAATGAGGATCGGCCCCCTGAAGATTCTTCCTT
AGAACTCCCTCTGGCAGTGTGA

Translation (543 aa):
MDAFTGSGLKRKFDDVDVGSSVSNSDDEISSSDSADSCDSLNPPTTASFTPTSILKRQKQLRRKNVRFDQ
VTVYYFARRQGFTSVPSQGGSSLGMAQRHNSVRSYTLCEFAQEQEVNHREILREHLKEEKLHAKKMKLTK
NGTVESVEADGLTLDDVSDEDIDVENVEVDDYFFLQPLPTKRRRALLRASGVHRIDAEEKQELRAIRLSR
EECGCDCRLYCDPEACACSQAGIKCQVDRMSFPCGCSRDGCGNMAGRIEFNPIRVRTHYLHTIMKLELES
KRQVSRPAAPDEEPSPTASCSLTGAQGSETQDFQEFIAENETAVMHLQSAEELERLKAEEDSSGSSASLD
SSIESLGVCILEEPLAVPEELCPGLTAPILIQAQLPPGSSVLCFTENSDHPTASTVNSPSYLNSGPLVYY
QVEQRPVLGVKGEPGTEEGSASFPKEKDLNVFSLPVTSLVACSSTDPAALCKSEVGKTPTLEALLPEDCN
PEEPENEDFHPSWSPSSLPFRTDNEEGCGMVKTSQQNEDRPPEDSSLELPLAV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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