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Report for CCDS8824.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8824.1 Public Homo sapiens 12 KRT85 24 110 108 CCDS HistoryNCBI Gene:3891Re-query CCDS DB by CCDS ID:8824.1Re-query CCDS DB by GeneID:3891See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8824.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000257901.7 ENSP00000257901.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000257901.7Link to Ensembl Protein Viewer:ENSP00000257901.3Re-query CCDS DB by Nucleotide ID:ENST00000257901Re-query CCDS DB by Protein ID:ENSP00000257901
Original member Current member NCBI NM_002283.4 NP_002274.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002283.4Link to Protein Sequence:NP_002274.1Re-query CCDS DB by Nucleotide ID:NM_002283Re-query CCDS DB by Protein ID:NP_002274Link to BLAST:NP_002274.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002274.1 507 P78386 507 100% 0 0

Chromosomal Locations for CCDS 8824.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 52360853 52361046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52361467 52361498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52362251 52362471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52362854 52362979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52363246 52363410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52364068 52364163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52364306 52364366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52364962 52365170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52366986 52367405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1524 nt):
ATGTCGTGCCGCTCCTACAGGATCAGCTCAGGATGCGGGGTCACCAGGAACTTCAGCTCCTGCTCAGCTG
TGGCCCCCAAAACTGGCAACCGCTGCTGCATCAGCGCCGCCCCCTACCGAGGGGTGTCCTGCTACCGAGG
GCTGACGGGCTTCGGCAGCCGCAGCCTCTGCAACCTGGGCTCCTGCGGGCCCCGGATAGCTGTAGGTGGC
TTCCGAGCCGGCTCCTGCGGACGCAGCTTCGGCTACCGCTCCGGGGGCGTGTGCGGACCCAGCCCCCCAT
GCATCACTACCGTGTCGGTCAACGAGAGCCTCCTCACGCCCCTCAACCTGGAGATCGACCCCAACGCACA
GTGCGTGAAGCAGGAGGAGAAGGAGCAGATCAAGTCCCTCAACAGCAGGTTCGCGGCCTTCATCGACAAG
GTGCGCTTCCTGGAGCAGCAGAACAAGCTGCTGGAGACCAAGTGGCAGTTCTACCAGAACCAGCGCTGCT
GCGAGAGCAACCTGGAGCCACTGTTCAGTGGCTACATCGAGACTCTGCGGCGGGAGGCCGAGTGCGTGGA
GGCCGACAGCGGGAGGCTGGCCTCAGAGCTCAACCATGTGCAGGAGGTGCTGGAGGGCTACAAGAAGAAG
TATGAAGAGGAGGTGGCCCTGAGAGCCACAGCAGAGAATGAGTTTGTCGTTCTAAAGAAGGACGTGGACT
GTGCCTACCTGCGGAAATCAGACCTGGAGGCCAATGTGGAGGCCCTGGTGGAGGAGTCTAGCTTCCTGAG
GCGCCTCTATGAAGAGGAGATCCGCGTTCTCCAAGCCCACATCTCAGACACCTCGGTCATAGTCAAGATG
GACAACAGCCGAGACCTGAACATGGACTGCATCATCGCTGAGATCAAGGCTCAGTATGACGATGTTGCCA
GCCGCAGCCGGGCCGAGGCTGAGTCCTGGTACCGTAGCAAGTGTGAGGAGATGAAGGCCACGGTGATCAG
GCATGGGGAGACCCTGCGCCGCACCAAGGAGGAGATCAACGAGCTGAACCGCATGATCCAGAGGCTGACG
GCCGAGATTGAGAATGCCAAGTGCCAGCGTGCCAAGCTGGAGGCTGCTGTGGCTGAGGCAGAGCAGCAGG
GTGAGGCGGCCCTCAGCGATGCCCGCTGCAAGCTGGCTGAGCTGGAGGGCGCCCTGCAGAAGGCCAAGCA
GGACATGGCCTGCCTGCTCAAGGAGTACCAGGAGGTGATGAACTCCAAGCTGGGCCTGGACATCGAGATC
GCCACCTACAGGCGCCTGCTGGAGGGCGAGGAACACAGGCTGTGTGAAGGTGTGGGCTCTGTGAATGTCT
GTGTCAGCAGCTCCCGTGGTGGAGTCTCCTGTGGGGGCCTCTCCTACAGCACCACCCCAGGGCGCCAGAT
CACTTCTGGCCCCTCAGCCATAGGCGGCAGCATCACGGTGGTGGCCCCTGACTCCTGTGCCCCCTGCCAG
CCTCGTTCCTCCAGCTTCAGCTGCGGGAGTAGCCGGTCGGTCCGCTTTGCCTAG

Translation (507 aa):
MSCRSYRISSGCGVTRNFSSCSAVAPKTGNRCCISAAPYRGVSCYRGLTGFGSRSLCNLGSCGPRIAVGG
FRAGSCGRSFGYRSGGVCGPSPPCITTVSVNESLLTPLNLEIDPNAQCVKQEEKEQIKSLNSRFAAFIDK
VRFLEQQNKLLETKWQFYQNQRCCESNLEPLFSGYIETLRREAECVEADSGRLASELNHVQEVLEGYKKK
YEEEVALRATAENEFVVLKKDVDCAYLRKSDLEANVEALVEESSFLRRLYEEEIRVLQAHISDTSVIVKM
DNSRDLNMDCIIAEIKAQYDDVASRSRAEAESWYRSKCEEMKATVIRHGETLRRTKEEINELNRMIQRLT
AEIENAKCQRAKLEAAVAEAEQQGEAALSDARCKLAELEGALQKAKQDMACLLKEYQEVMNSKLGLDIEI
ATYRRLLEGEEHRLCEGVGSVNVCVSSSRGGVSCGGLSYSTTPGRQITSGPSAIGGSITVVAPDSCAPCQ
PRSSSFSCGSSRSVRFA


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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