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Report for CCDS88839.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88839.1 Public Mus musculus 15 Prpf40b 23 108 98 CCDS HistoryNCBI Gene:54614Re-query CCDS DB by CCDS ID:88839.1Re-query CCDS DB by GeneID:54614See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88839.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118287.8 ENSMUSP00000113282.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118287.8Link to Ensembl Protein Viewer:ENSMUSP00000113282.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000118287Re-query CCDS DB by Protein ID:ENSMUSP00000113282
Original member Current member NCBI NM_001348256.1 NP_001335185.1 Accepted alive Link to Nucleotide Sequence:NM_001348256.1Link to Protein Sequence:NP_001335185.1Re-query CCDS DB by Nucleotide ID:NM_001348256Re-query CCDS DB by Protein ID:NP_001335185Link to BLAST:NP_001335185.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001335185.1 870 Q80W14-1 870 99.8851% 0 1

Chromosomal Locations for CCDS 88839.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 99303346 99303363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99304041 99304184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99304425 99304490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99305166 99305193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99305408 99305433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99305541 99305651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99305951 99306071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99306162 99306186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99306396 99306599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99306805 99306931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99307013 99307077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99307557 99307721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99307822 99307930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99308191 99308341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99309063 99309196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99309685 99309799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99309944 99310035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99314578 99314694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99314843 99314980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99315191 99315286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99315480 99315569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99315723 99315900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99316087 99316148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99316243 99316380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99316461 99316553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2613 nt):
ATGATGCCACCACCCTTCATGCCCCCTCCAGGGCTCCCACCTCCTTTTCCTCCGATGGGGCTCCCCCCTA
TGAGTCAGAGACCACCAGCCATTCCCCCCATGCCACCTGGCATACTGCCCCCAATGCTTCCACCAATGGG
GGCACCGCCACCACTTACACAGATACCAGGAATGGTCCCTCCAATGATGCCGGGGATGCTGATGCCAGCG
GTGCCTGTCACTGCAGCGACGGCTCCGGGTGCGGACACCGCCAGCTCTGCTGTGGCTGGAACAGGCCCTC
CGAGGGCCTTATGGAGTGAGCACGTAGCCCCTGACGGGCGCATCTACTACTACAATGCTGATGATAAGCA
ATCCGTGTGGGAGAAGCCCAGCGTACTCAAGTCTAAGGCAGAGCTGCTGCTGTCCCAGTGTCCCTGGAAA
GAGTATAAGTCAGATACAGGGAAGCCTTACTACTACAACAACCAGAGTCAGGAGTCCCGGTGGACTCGGC
CCAAGGACCTGGATGACCTGGAAGCCCTCGTCAAACAAGAGTCTGCAGGAAAACAGCAGACCCAGCAACT
ACAGACACTACAGCCACAACCACCTCAGCCACAGCCTGACCCTCCACCTATACCTCCGGGTCCCATCCCA
GTGCCTATGGCCCTCCTGGAACCTGAACCAGGTCGAAGTGAAGACTGTGATGTGCTGGAGGCTGCCCAGC
CCCTGGAGCAGGGCTTCCTGCAGCGGGAGGAGGGCCCCAGCAGCTCTACTGGACAGCATCGGCAGCCACA
GGAAGAGGAGGAAGCTAAGCCAGAACCAGAGCGATCTGGCCTCAGTTGGAGCAACCGGGAGAAGGCAAAA
CAGGCTTTCAAAGAACTGCTAAGGGACAAGGCTGTCCCTTCCAATGCTTCATGGGAACAGGCCATGAAGA
TGGTAGTCACTGACCCCCGCTACAGTGCCTTGCCCAAACTAAGTGAGAAGAAGCAGGCGTTTAATGCTTA
CAAGGCTCAGCGGGAGAAGGAGGAGAAAGAGGAGGCCCGGCTGAGAGCCAAGGAGGCCAAGCAGACCCTG
CAGCATTTCCTGGAACAGCATGAACGCATGACCTCCACCACCCGCTACCGGCGGGCAGAACAGACTTTTG
GGGACCTGGAGGTCTGGGCTGTGGTCCCTGAGAGAGAGAGAAAGGAAGTTTATGATGATGTCCTCTTCTT
CCTGGCCAAGAAGGAGAAGGAACAAGCCAAGCAGCTCCGGCGTCGGAATATCCAGGCCCTGAAGAGCATC
CTGGATGGGATGAGCAGTGTCAACTTCCAAACCACTTGGTCCCAGGCCCAGCAGTACCTCATGGATAACC
CCAGCTTTGCTCAGGACCAGCAGCTGCAGAACATGGACAAGGAAGATGCACTTATCTGCTTTGAGGAGCA
TATCCGGGCTTTGGAGAGAGAGGAGGAGGAAGAGCGAGAACGGGCCCGGCTTCGGGAGCGGCGACAGCAG
CGGAAGAATCGGGAGGCCTTTCAGAGCTTCCTGGACGAGCTGCATGAGACAGGGCAGCTGCACTCCATGT
CCACCTGGATGGAGCTGTACCCGGCAGTCAGCACTGACGTTCGCTTTGCCAACATGCTGGGCCAGCCGGG
CTCTACTCCTTTGGACTTGTTCAAGTTCTATGTGGAGGAGTTGAAGGCTCGATTCCACGATGAGAAGAAG
ATCATAAAGGATATCCTTAAGGATCGGGGCTTCTGTGTGGAGGTGAACACAGCATTTGAGGACTTCGCCC
ACGTCATAAGCTTTGACAAGAGGGCTGCTGCGCTGGACGCAGGCAACATCAAGCTGACCTTCAATAGTCT
GCTGGAAAAAGCAGAGGCACGGGAGAGGGAACGGGAAAAGGAGGAGGCCCGAAGGATGCGGCGCAGAGAA
GCTGCCTTTCGAAGCATGCTGAGGCAGGCCGTGCCTGCTCTGGAGCTGGGCACTGCCTGGGAAGAGGTCC
GTGAGCGCTTTGTGTGCGACTCAGCCTTTGAGCAGATCACCCTGGAGTCGGAGCGGATCCGGCTCTTCCG
AGAGTTCCTGCAGGTGTTGGAGCAGACTGAATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGA
AAGGGCAAGAAACACCATCGCAAGCGTTCACACTCACCCTCAGGCTCTGAGTCAGATGAAGAGGAGCTGC
CCCCACCATCCCTCCGGCCCCCCAAGCGGAGGAGGCGGAACCCCTCAGAATCTGGCTCTGAGCCCTCCTC
CTCACTTGATTCAGTTGAAAGTGGGGGTGCTGCTCTTGGAGGACCAGGCTCCCCATCTTCCCACCTTCTT
CTTGGGTCAGATCATGGTCTTCGGAAAACCAAGAAACCAAAAAAGAAAACCAAGAAAAGAAGACACAAGT
CGACCAGTCCTGACAGTGAGACGGACCCCGAAGACAAAGCTGGTAAGGAGAGTGAAGACAGAGAACAGGA
ACAGGACAGGGAACCCCGGCAGGCAGAGCTCCCTAACCGTTCCCCAGGCTTCGGAATCAAGAAGGAGAAG
ACAGGCTGGGACACGTCAGAAAGCGAGCTGAGTGAGGGGGAGCTGGAGAGGCGAAGGCGGACACTCCTAC
AGCAGCTGGACGACCACCAATGA

Translation (870 aa):
MMPPPFMPPPGLPPPFPPMGLPPMSQRPPAIPPMPPGILPPMLPPMGAPPPLTQIPGMVPPMMPGMLMPA
VPVTAATAPGADTASSAVAGTGPPRALWSEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWK
EYKSDTGKPYYYNNQSQESRWTRPKDLDDLEALVKQESAGKQQTQQLQTLQPQPPQPQPDPPPIPPGPIP
VPMALLEPEPGRSEDCDVLEAAQPLEQGFLQREEGPSSSTGQHRQPQEEEEAKPEPERSGLSWSNREKAK
QAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKEEARLRAKEAKQTL
QHFLEQHERMTSTTRYRRAEQTFGDLEVWAVVPERERKEVYDDVLFFLAKKEKEQAKQLRRRNIQALKSI
LDGMSSVNFQTTWSQAQQYLMDNPSFAQDQQLQNMDKEDALICFEEHIRALEREEEEERERARLRERRQQ
RKNREAFQSFLDELHETGQLHSMSTWMELYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKK
IIKDILKDRGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRMRRRE
AAFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVLEQTECQHLHTKGRKHGR
KGKKHHRKRSHSPSGSESDEEELPPPSLRPPKRRRRNPSESGSEPSSSLDSVESGGAALGGPGSPSSHLL
LGSDHGLRKTKKPKKKTKKRRHKSTSPDSETDPEDKAGKESEDREQEQDREPRQAELPNRSPGFGIKKEK
TGWDTSESELSEGELERRRRTLLQQLDDHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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