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Report for CCDS88980.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88980.1 Public Mus musculus 16 Zbtb21 23 108 98 CCDS HistoryNCBI Gene:114565Re-query CCDS DB by CCDS ID:88980.1Re-query CCDS DB by GeneID:114565See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88980.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000232187.1 ENSMUSP00000156033.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232187.1Link to Ensembl Protein Viewer:ENSMUSP00000156033.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232187Re-query CCDS DB by Protein ID:ENSMUSP00000156033
Original member Current member NCBI NM_001320385.1 NP_001307314.1 Accepted alive Link to Nucleotide Sequence:NM_001320385.1Link to Protein Sequence:NP_001307314.1Re-query CCDS DB by Nucleotide ID:NM_001320385Re-query CCDS DB by Protein ID:NP_001307314Link to BLAST:NP_001307314.1

Chromosomal Locations for CCDS 88980.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 97949881 97950869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97952928 97953081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1143 nt):
ATGGAGGGACTGCTGCATTACATCAACCCAGCACATGCTATCTCTCTGCTCAGTGCCCTCAATGAGGAGC
GCCTCAAGGGACAGCTGTGTGACGTGCTCCTGATTGTTGGGGACCAGAAATTCCGAGCTCATAAGAACGT
CTTGGCTGCCAGCAAGCAAGGCAACCACGAGCGCTTGTGCCGGAACGCCACCGTTTGCCCTTACTGCAGC
CTCAGGTTCTTCTCTCCCGCACTGAAGCAGGAACATGAGGACAGGTGTGAGTACAAAAAGCTGACTTGCC
TGGAGTGCATGCGCACCTTCAAGTCCTCCTTCAGCATCTGGCGGCACCAGGTAGAAGTGCATAACCAGAA
CAACATGGCTTTAGCAGAGAACTTCGCCCTGGCCACCCTGGACCACAACGGTGAAGTGGCAGCCGCTTCC
AGGCCTCAGACTGAGCCCAGCAAGGTAAACCATGTGGCCACTCCAAAAGAGGATACAGCATTTAGCGACT
CTTCAGAGCAAGTGAACTTTGATTCTGAGGATTCCTCCTGCCTCCCTGAAGACTTGAGTCTTTCAAAGCA
ACTGAAAGTCCAAGTCAAAGAGGAGCCTGTGGAGGAGGCAGAGGAGGAGGCTCCTGAGGCTAGTGCAGCT
CCCAGGGAGGCTGGCCCCAGCAAGGAGACCGGCCTATGGCCCTGTGAGAAATGCGGAAAGATGTTCACGG
CACACAAGCAGCTGGAGCGGCACCAGGAGCTGCTGTGTTCTGTGAAGCCCTTCATCTGCCACGTATGCTA
CAAAGCCTTCCGTACCAACTTCCGACTCTGGAGTCACTTCCAGACCCACATGTCTCAGGCTACAGAGGAG
CCTGTGCAGAAAGAATCAGAGGTGTGTCCTGTGCCCACAAACTCCCCCTCCCCACCACCTCTGCCACCTC
CGCCACCCTTGCCCAAGATTCAGCCCCTGGAGCCAGACAGCCCCACAGGCCTGCCTGAGAACCCAACCCC
AGCTACAGAGAAGCTGTTTGCACCCCAGGAGTCAGATACCCTCTTCTACCACGCCCCACCCCTTTCAGCA
ATCACATTTAAAAGACAGTTCATGTGCAAGCTCTGCCATAGGACATTCAAGACGGCCTTCAGTCTTTGGA
GTCATGAGCAGACACACAATTAA

Translation (380 aa):
MEGLLHYINPAHAISLLSALNEERLKGQLCDVLLIVGDQKFRAHKNVLAASKQGNHERLCRNATVCPYCS
LRFFSPALKQEHEDRCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMALAENFALATLDHNGEVAAAS
RPQTEPSKVNHVATPKEDTAFSDSSEQVNFDSEDSSCLPEDLSLSKQLKVQVKEEPVEEAEEEAPEASAA
PREAGPSKETGLWPCEKCGKMFTAHKQLERHQELLCSVKPFICHVCYKAFRTNFRLWSHFQTHMSQATEE
PVQKESEVCPVPTNSPSPPPLPPPPPLPKIQPLEPDSPTGLPENPTPATEKLFAPQESDTLFYHAPPLSA
ITFKRQFMCKLCHRTFKTAFSLWSHEQTHN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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