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Report for CCDS89049.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89049.1 Public Mus musculus 17 Mtch1 23 108 98 CCDS HistoryNCBI Gene:56462Re-query CCDS DB by CCDS ID:89049.1Re-query CCDS DB by GeneID:56462See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89049.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000235088.1 ENSMUSP00000157094.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235088.1Link to Ensembl Protein Viewer:ENSMUSP00000157094.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235088Re-query CCDS DB by Protein ID:ENSMUSP00000157094
Original member Current member NCBI NM_001357763.1 NP_001344692.1 Accepted alive Link to Nucleotide Sequence:NM_001357763.1Link to Protein Sequence:NP_001344692.1Re-query CCDS DB by Nucleotide ID:NM_001357763Re-query CCDS DB by Protein ID:NP_001344692Link to BLAST:NP_001344692.1

Chromosomal Locations for CCDS 89049.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 29332707 29332778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29333514 29333589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29333775 29333842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29333958 29334005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29336218 29336311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29338742 29338801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29339791 29339842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29340068 29340125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29340421 29340498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29340791 29340897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29342823 29342892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (783 nt):
ATGCCCCCCACCCTTGGGACCAATGTGCTGGGGAGGAAGGTCCTCTACCTGCCGAGCTTCTTCACCTATG
CCAAGTACATTGTGCAGGTGGATGGGAAGATAGGGCTCTTCCGGGGCCTGAGCCCCCGCCTTATGTCCAA
CGCCTTGTCCACTGTGACCCGCGGCAGCATGAAGAAGGTTTTCCCTCCAGATGAGATGGAGCAGGTTTCC
AACAAGGACGACATGAAGACCTCACTCAAGAAAGTTGTGAAGGAGACATCGTATGAGATGATGATGCAGT
GTGTATCGCGAATGCTGGCCCATCCCTTACACGTGATCTCGATGCGATGCATGGTGCAGTTTGTGGGACG
GGAGGCCAAGTACAGTGGTGTGCTGAGTTCTATTGGGAAGATCTTCAAGGAAGAGGGGCTGCTGGGATTC
TTCGTTGGCTTAATCCCTCACCTCCTGGGCGATGTGGTTTTCTTGTGGGGCTGTAACCTGCTGGCCCACT
TCATCAATGCCTACTTGGTGGACGACAGCTTTAGCCAGGCCCTGGCCATCCGGAGCTACACCAAGTTTGT
GATGGGGATTGCAGTGAGCATGCTGACCTACCCCTTCCTGCTCGTTGGAGATCTCATGGCAGTGAACAAC
TGTGGGCTGCGGGCTGGACTCCCTCCGTATTCCCCTGTGTTCAAGTCCTGGATCCACTGCTGGAAGTACC
TGAGTGTGCAGGGCCAGCTCTTCCGCGGCTCCAGCCTGCTTTTCCGCCGGGTGTCATCGGGGTCATGCTT
TGCCCTGGAGTAA

Translation (260 aa):
MPPTLGTNVLGRKVLYLPSFFTYAKYIVQVDGKIGLFRGLSPRLMSNALSTVTRGSMKKVFPPDEMEQVS
NKDDMKTSLKKVVKETSYEMMMQCVSRMLAHPLHVISMRCMVQFVGREAKYSGVLSSIGKIFKEEGLLGF
FVGLIPHLLGDVVFLWGCNLLAHFINAYLVDDSFSQALAIRSYTKFVMGIAVSMLTYPFLLVGDLMAVNN
CGLRAGLPPYSPVFKSWIHCWKYLSVQGQLFRGSSLLFRRVSSGSCFALE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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