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Report for CCDS901.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
901.1 Public Homo sapiens 1 HAO2 24 110 108 CCDS HistoryNCBI Gene:51179Re-query CCDS DB by CCDS ID:901.1Re-query CCDS DB by GeneID:51179See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 901.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000325945.4 ENSP00000316339.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000325945.4Link to Ensembl Protein Viewer:ENSP00000316339.3Re-query CCDS DB by Nucleotide ID:ENST00000325945Re-query CCDS DB by Protein ID:ENSP00000316339
Original member Current member EBI ENST00000622548.4 ENSP00000483507.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000622548.4Link to Ensembl Protein Viewer:ENSP00000483507.1Re-query CCDS DB by Nucleotide ID:ENST00000622548Re-query CCDS DB by Protein ID:ENSP00000483507
Original member Current member NCBI NM_016527.4 NP_057611.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016527.4Link to Protein Sequence:NP_057611.1Re-query CCDS DB by Nucleotide ID:NM_016527Re-query CCDS DB by Protein ID:NP_057611Link to BLAST:NP_057611.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057611.1 351 Q9NYQ3-1 351 100% 0 0

Chromosomal Locations for CCDS 901.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 119381086 119381216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119382915 119383066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119384776 119385053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119386622 119386831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119392110 119392268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119392618 119392687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119393785 119393840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGTCCTTGGTGTGTTTGACAGACTTTCAGGCCCATGCGCGAGAGCAGCTGTCTAAGTCAACTCGGGATT
TTATTGAAGGTGGAGCAGATGACAGCATCACGCGGGATGACAACATTGCAGCATTTAAAAGAATTCGCCT
CCGTCCGCGGTACCTGAGAGATGTGTCTGAGGTGGACACCAGAACCACAATCCAAGGGGAGGAGATCAGT
GCCCCTATTTGTATCGCACCCACAGGGTTCCACTGCCTTGTCTGGCCTGATGGGGAAATGAGCACAGCAA
GAGCTGCCCAAGCGGCTGGTATCTGCTACATCACCAGCACATTTGCCAGCTGTAGCCTTGAAGACATTGT
CATTGCAGCTCCCGAAGGCCTCCGATGGTTCCAACTCTATGTGCATCCAGACCTGCAGCTGAACAAACAG
TTGATCCAGAGGGTAGAATCCCTAGGTTTCAAAGCTTTGGTAATAACTTTGGATACACCTGTATGTGGCA
ACAGGCGACATGACATTCGAAACCAGTTGAGGAGGAACTTAACACTAACAGATCTTCAATCACCTAAAAA
GGGAAATGCAATACCTTATTTCCAGATGACTCCTATCAGCACTTCTCTCTGCTGGAATGATCTCTCCTGG
TTTCAGAGCATAACTCGATTGCCCATCATCCTGAAAGGGATTTTGACAAAAGAGGATGCAGAGTTAGCTG
TGAAGCACAATGTCCAGGGTATCATTGTTTCCAACCATGGTGGGAGGCAGCTTGATGAGGTTCTTGCTTC
AATTGATGCTTTGACAGAAGTGGTGGCTGCTGTAAAGGGGAAAATTGAAGTCTACCTGGATGGCGGGGTC
CGAACTGGCAATGATGTGCTGAAGGCTCTGGCCCTTGGAGCTAAGTGCATTTTTCTTGGGAGACCAATCC
TATGGGGCCTTGCCTGCAAGGGTGAACATGGTGTTAAGGAAGTTTTGAACATTTTAACAAATGAGTTCCA
CACTTCCATGGCCCTTACAGGCTGCCGGTCGGTCGCTGAGATCAATCGAAACTTGGTCCAGTTTTCCAGG
CTGTAA

Translation (351 aa):
MSLVCLTDFQAHAREQLSKSTRDFIEGGADDSITRDDNIAAFKRIRLRPRYLRDVSEVDTRTTIQGEEIS
APICIAPTGFHCLVWPDGEMSTARAAQAAGICYITSTFASCSLEDIVIAAPEGLRWFQLYVHPDLQLNKQ
LIQRVESLGFKALVITLDTPVCGNRRHDIRNQLRRNLTLTDLQSPKKGNAIPYFQMTPISTSLCWNDLSW
FQSITRLPIILKGILTKEDAELAVKHNVQGIIVSNHGGRQLDEVLASIDALTEVVAAVKGKIEVYLDGGV
RTGNDVLKALALGAKCIFLGRPILWGLACKGEHGVKEVLNILTNEFHTSMALTGCRSVAEINRNLVQFSR
L


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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