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Report for CCDS9025.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9025.1 Public Homo sapiens 12 TMTC2 24 110 108 CCDS HistoryNCBI Gene:160335Re-query CCDS DB by CCDS ID:9025.1Re-query CCDS DB by GeneID:160335See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9025.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000321196.8 ENSP00000322300.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000321196.8Link to Ensembl Protein Viewer:ENSP00000322300.3Re-query CCDS DB by Nucleotide ID:ENST00000321196Re-query CCDS DB by Protein ID:ENSP00000322300
Original member Current member NCBI NM_152588.3 NP_689801.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152588.3Link to Protein Sequence:NP_689801.1Re-query CCDS DB by Nucleotide ID:NM_152588Re-query CCDS DB by Protein ID:NP_689801Link to BLAST:NP_689801.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689801.1 836 Q8N394 836 100% 0 0

Chromosomal Locations for CCDS 9025.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 82687587 82687669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 82857010 82857580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 82895818 82896646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 82930431 82930545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 82965024 82965109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 82965560 82965744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 82966919 82966997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 82985925 82986046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83030798 83030879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83050904 83051018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83061768 83061831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83132210 83132389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2511 nt):
ATGATTGCAGAGTTGGTGAGCAGCGCTCTGGGGCTCGCCTTGTATCTCAACACCCTGAGTGCGGATTTCT
GCTATGATGACAGCCGTGCTATCAAGACTAATCAGGACCTTCTCCCAGAAACTCCATGGACGCACATTTT
CTACAATGATTTTTGGGGGACTCTTCTAACCCACAGTGGCAGCCACAAGTCCTACCGGCCACTCTGCACT
CTTTCTTTTCGCCTGAACCATGCCATTGGAGGGTTGAATCCCTGGAGCTACCATCTTGTCAATGTCCTGT
TGCATGCAGCAGTCACTGGTCTCTTCACAAGCTTCTCCAAGATCCTCCTTGGTGATGGATACTGGACATT
CATGGCTGGCTTGATGTTTGCTTCTCACCCCATTCACACGGAGGCAGTGGCAGGAATCGTGGGACGAGCC
GATGTCGGGGCCAGTCTCTTCTTTCTCCTCTCCTTGCTCTGCTACATTAAACACTGTTCTACAAGAGGCT
ACTCAGCCAGAACCTGGGGCTGGTTCCTGGGGTCAGGACTGTGCGCAGGATGCAGCATGTTGTGGAAGGA
ACAAGGAGTGACTGTTCTCGCAGTTTCAGCAGTTTATGATGTCTTTGTCTTTCACAGGCTGAAAATAAAA
CAGATATTACCTACCATTTACAAAAGGAAGAACTTGTCGCTTTTCCTAAGCATTAGTTTGTTAATTTTCT
GGGGTTCCTCCCTTTTGGGTGCCCGGTTATACTGGATGGGAAACAAACCACCAAGCTTTTCCAACTCGGA
CAACCCCGCTGCTGATTCGGACAGCCTCCTCACCCGCACTCTCACCTTCTTCTACTTGCCAACCAAGAAC
CTCTGGCTGTTGCTATGTCCAGATACCCTCAGTTTTGATTGGTCAATGGATGCTGTGCCTCTGCTCAAAA
CAGTTTGTGACTGGAGAAACCTACACACTGTGGCCTTCTATACTGGACTCCTTCTCCTTGCCTACTATGG
TTTGAAGAGCCCGAGCGTAGACAGAGAATGCAATGGGAAAACTGTAACAAATGGCAAGCAGAATGCAAAT
GGACATAGCTGCCTTTCAGATGTGGAGTACCAGAACTCAGAGACTAAGTCCAGCTTTGCATCCAAAGTAG
AAAATGGCATTAAAAACGATGTATCACAGAGAACCCAGCTTCCTTCTACGGAGAACATTGTTGTTCTGTC
TTTATCTTTGTTAATCATACCCTTTGTTCCTGCCACGAACCTGTTTTTCTATGTCGGCTTTGTAATTGCA
GAGCGAGTATTATATATTCCTAGTATGGGCTTCTGCCTACTGATTACAGTGGGTGCTAGAGCCCTTTATG
TCAAAGTCCAAAAGCGGTTCCTCAAGAGCTTGATTTTTTATGCTACAGCTACACTAATTGTTTTTTATGG
ACTCAAGACTGCGATCAGGAATGGAGACTGGCAGAATGAGGAAATGCTTTATAGATCAGGGATAAAAGTA
AACCCAGCTAAAGCATGGGGTAACCTTGGAAATGTTCTGAAGAGTCAGAGCAAAATTTCTGAAGCTGAAA
GCGCCTATAGAAATGCTTTGTACTACCGCAGCAACATGGCTGACATGCTTTATAATTTAGGGCTACTTCT
CCAGGAGAACAGCAGGTTTGCAGAAGCACTACATTATTATAAATTGGCCATTGGGAGCAGGCCTACCCTG
GCTTCTGCATATTTAAATACCGGTATTATTCTAATGAACCAAGGAAGGACGGAAGAAGCCCGACGGACAT
TCTTAAAGTGTTCGGAGATCCCAGATGAAAACCTAAAGGACCCTCATGCACACAAGAGCTCTGTTACCAG
TTGTTTGTACAACCTAGGAAAGCTGTATCATGAGCAGGGACACTATGAGGAAGCCCTTAGTGTATACAAG
GAAGCAATTCAGAAAATGCCAAGGCAGTTTGCCCCACAGAGCTTGTACAACATGATGGGTGAAGCATATA
TGCGTTTAAGCAAACTCCCCGAAGCAGAGCATTGGTATATGGAATCACTGAGATCCAAGACTGACCACAT
CCCTGCTCATCTCACCTATGGGAAGCTGCTAGCTCTAACAGGTCGTAAGAGTGAGGCTGAAAAGCTCTTC
TTGAAGGCTATTGAGCTGGATCCCACCAAAGGAAACTGTTACATGCATTATGGTCAGTTTCTTCTGGAAG
AAGCTCGTCTCATAGAAGCAGCTGAGATGGCAAAAAAAGCAGCTGAACTAGACAGCACAGAGTTTGATGT
TGTCTTCAATGCTGCCCACATGCTCAGACAGGCTAGCCTCAATGAAGCAGCTGAGAAGTATTATGATCTG
GCAGCCAGGCTGAGGCCTAATTATCCGGCTGCTTTGATGAACCTGGGAGCCATTCTGCACCTCAATGGCA
GACTCCAGAAGGCCGAGGCCAACTACCTGCGGGCCCTGCAGCTCAAGCCAGACGATGTCATCACACAGTC
CAATCTCCGCAAACTGTGGAACATCATGGAAAAACAAGGCTTAAAGACTTCTAAGACCTGA

Translation (836 aa):
MIAELVSSALGLALYLNTLSADFCYDDSRAIKTNQDLLPETPWTHIFYNDFWGTLLTHSGSHKSYRPLCT
LSFRLNHAIGGLNPWSYHLVNVLLHAAVTGLFTSFSKILLGDGYWTFMAGLMFASHPIHTEAVAGIVGRA
DVGASLFFLLSLLCYIKHCSTRGYSARTWGWFLGSGLCAGCSMLWKEQGVTVLAVSAVYDVFVFHRLKIK
QILPTIYKRKNLSLFLSISLLIFWGSSLLGARLYWMGNKPPSFSNSDNPAADSDSLLTRTLTFFYLPTKN
LWLLLCPDTLSFDWSMDAVPLLKTVCDWRNLHTVAFYTGLLLLAYYGLKSPSVDRECNGKTVTNGKQNAN
GHSCLSDVEYQNSETKSSFASKVENGIKNDVSQRTQLPSTENIVVLSLSLLIIPFVPATNLFFYVGFVIA
ERVLYIPSMGFCLLITVGARALYVKVQKRFLKSLIFYATATLIVFYGLKTAIRNGDWQNEEMLYRSGIKV
NPAKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTL
ASAYLNTGIILMNQGRTEEARRTFLKCSEIPDENLKDPHAHKSSVTSCLYNLGKLYHEQGHYEEALSVYK
EAIQKMPRQFAPQSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLF
LKAIELDPTKGNCYMHYGQFLLEEARLIEAAEMAKKAAELDSTEFDVVFNAAHMLRQASLNEAAEKYYDL
AARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNLRKLWNIMEKQGLKTSKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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