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Report for CCDS9030.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
9030.1 |
Public |
Homo sapiens |
12 |
MGAT4C |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:25834](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:9030.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:25834](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 12 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 9030.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000552808.7 |
ENSP00000446647.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000552808.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000446647.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000552808](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000446647](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000548651.6 |
ENSP00000447253.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000548651.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000447253.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000548651](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000447253](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000620241.5 |
ENSP00000477650.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000620241.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000477650.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000620241](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000477650](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000621808.5 |
ENSP00000478300.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000621808.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000478300.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000621808](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000478300](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000611864.5 |
ENSP00000481096.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000611864.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000481096.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000611864](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000481096](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001351285.2 |
NP_001338214.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001351285.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001338214.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001351285](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001338214](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001338214.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001351286.2 |
NP_001338215.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001351286.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001338215.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001351286](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001338215](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001338215.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001351287.2 |
NP_001338216.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001351287.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001338216.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001351287](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001338216](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001338216.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001351288.2 |
NP_001338217.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001351288.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001338217.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001351288](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001338217](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001338217.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001351289.2 |
NP_001338218.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001351289.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001338218.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001351289](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001338218](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001338218.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001351291.2 |
NP_001338220.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001351291.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001338220.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001351291](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001338220](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001338220.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_013244.5 |
NP_037376.2 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_013244.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_037376.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_013244](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_037376](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_037376.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 9030.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1437 nt): ATGTTTAAATTTCATCAAATGAAACATATTTTTGAAATACTTGATAAAATGAGATGCCTGAGAAAACGTT CTACAGTGTCATTCTTGGGAGTTCTTGTCATTTTTCTCCTTTTTATGAACTTGTACATTGAAGATAGCTA TGTTCTGGAAGGAGACAAACAACTTATAAGGGAAACATCCACACATCAACTGAATTCAGAACGCTATGTT CATACTTTCAAGGATTTATCTAATTTCTCAGGAGCCATAAATGTCACCTATCGCTACCTAGCTGCCACAC CTTTACAAAGAAAGCGGTATCTTACAATTGGACTTTCTTCAGTAAAGCGAAAAAAAGGAAACTATTTACT TGAGACAATTAAGTCAATTTTTGAGCAATCCAGCTATGAAGAGCTGAAGGAAATTTCAGTGGTGGTTCAC CTAGCAGACTTTAATTCTTCCTGGCGTGATGCCATGGTCCAGGATATTACACAGAAATTTGCGCACCATA TTATTGCAGGAAGATTAATGGTTATACATGCTCCAGAGGAGTATTACCCAATCCTAGATGGCCTTAAAAG AAATTACAATGATCCAGAAGATAGAGTCAAATTTCGTTCCAAGCAAAATGTAGATTATGCTTTTCTGCTT AATTTTTGTGCCAATACTTCAGACTATTATGTAATGCTTGAAGATGATGTTCGATGTTCAAAAAATTTCT TAACTGCCATCAAGAAAGTCATTGCATCCCTAGAAGGAACTTACTGGGTAACTCTTGAATTCTCTAAGCT TGGCTACATTGGTAAACTCTATCATTCTCATGATCTCCCACGTTTGGCCCATTTTTTATTAATGTTTTAT CAAGAAATGCCTTGTGATTGGCTATTGACTCATTTCCGTGGTCTGTTGGCTCAGAAAAATGTGATCCGTT TTAAACCATCTCTCTTTCAGCACATGGGCTATTATTCATCATACAAAGGGACGGAGAATAAGCTGAAGGA TGATGATTTTGAAGAGGAGTCATTTGACATTCCTGATAACCCCCCTGCAAGTCTGTACACCAACATGAAT GTGTTTGAAAATTATGAAGCAAGCAAGGCTTACAGTAGTGTTGATGAGTACTTTTGGGGGAAACCACCTT CAACAGGAGATGTTTTTGTGATTGTATTTGAAAATCCAATTATAATAAAAAAAATTAAAGTAAATACTGG AACAGAAGATCGGCAAAATGATATTTTGCATCATGGAGCCCTAGATGTTGGGGAAAACGTTATGCCTAGC AAACAAAGGAGACAATGTTCTACTTACTTAAGACTAGGAGAATTCAAAAATGGAAACTTTGAAATGTCAG GTGTAAATCAAAAAATTCCATTTGATATACATTGTATGAGGATATATGTCACCAAAACACAAAAGGAATG GCTAATTATTAGGAGTATTAGCATTTGGACTTCTTAG
Translation (478 aa): MFKFHQMKHIFEILDKMRCLRKRSTVSFLGVLVIFLLFMNLYIEDSYVLEGDKQLIRETSTHQLNSERYV HTFKDLSNFSGAINVTYRYLAATPLQRKRYLTIGLSSVKRKKGNYLLETIKSIFEQSSYEELKEISVVVH LADFNSSWRDAMVQDITQKFAHHIIAGRLMVIHAPEEYYPILDGLKRNYNDPEDRVKFRSKQNVDYAFLL NFCANTSDYYVMLEDDVRCSKNFLTAIKKVIASLEGTYWVTLEFSKLGYIGKLYHSHDLPRLAHFLLMFY QEMPCDWLLTHFRGLLAQKNVIRFKPSLFQHMGYYSSYKGTENKLKDDDFEEESFDIPDNPPASLYTNMN VFENYEASKAYSSVDEYFWGKPPSTGDVFVIVFENPIIIKKIKVNTGTEDRQNDILHHGALDVGENVMPS KQRRQCSTYLRLGEFKNGNFEMSGVNQKIPFDIHCMRIYVTKTQKEWLIIRSISIWTS
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