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Report for CCDS9031.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9031.1 Public Homo sapiens 12 C12orf50 24 110 108 CCDS HistoryNCBI Gene:160419Re-query CCDS DB by CCDS ID:9031.1Re-query CCDS DB by GeneID:160419See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9031.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000298699.7 ENSP00000298699.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000298699.7Link to Ensembl Protein Viewer:ENSP00000298699.2Re-query CCDS DB by Nucleotide ID:ENST00000298699Re-query CCDS DB by Protein ID:ENSP00000298699
Original member Current member NCBI NM_152589.3 NP_689802.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152589.3Link to Protein Sequence:NP_689802.1Re-query CCDS DB by Nucleotide ID:NM_152589Re-query CCDS DB by Protein ID:NP_689802Link to BLAST:NP_689802.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689802.1 414 Q8NA57 414 100% 0 0

Chromosomal Locations for CCDS 9031.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 87980331 87980356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87983103 87983195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87985850 87986053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87986312 87986416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87987850 87987966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87989264 87989371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87994633 87994743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87996374 87996487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87996569 87996646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87998035 87998190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88026488 88026608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88026951 88026962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1245 nt):
ATGGAAATGCAGCAAAACTGCAGCATTTCATGCTTCTGGGAAACTCAGCCTCTTGGTTGTGTGAAGATCA
GCTGTATCTTTTATCACAGCAAACCTCGAAATATCAATGGATTATTTTTGCCACCAAGTAGCAATATCAC
ACTACAGAAAGAAATTCAGGAAGGAATTCCACTCCAGTCCCAGAGTCAAGAACCTCTGAAACCTCAGGAA
AATATATCACGACCCATCCACCATCCTTTAGTTTTAAAAACTAATTTTGAGGAAGAAGAGGAAGTAGATG
AACAAAATGATGCTTCTAGTTTATGGACAAAGACCCCTGAAGAAATTGAAGAAAAAAGAGCAATAAAGGA
GATGTGTTATAAATCTGGGGAATACTACAGATTTCATACTCCTCCAGATATTTTGTCATCAAAAAGCATG
ACACCTACAGCAGAAAAACAGTTAGAAAAGCCTTTGGAAAATGGCAGTGAATTGCAAGAAGGAGATAGTC
TTACAGTTCCGACAAAACTTAGCCAATATGAAAGGCAAGGTGAAATAAAAACATCATTGCATGGGAAACC
AAAGACTGACATTGCTGCTTTTGAAAATGGAGGAGGTGACTGTTATGTTCCACAGAGGGTCATATTTCTT
GGAGTCGATGAAAGTGAAGCTTTAACTGAAGAGAAAGAAATCACCATATCAAAATGTTCAAATACTAAAG
ATAACAAGGACAGTCCTCATCCAAAGCATTCCCTAACTACCCGACTAGTACCTACAACGCATGTATTAAA
TGCTACTGAGAATATCAGTATGAAGTGCAGAGAGGACCCCTCTTCAATGAATGATGTCCAGCCAGTGAAG
AAGCCTCATTTTAAAGGTGTGAAGAAAAGAAAATGGATTTATGATGAACCACAGAACTTTCCTAACTCTG
GAATGCAGAGAGCAGTACAGGCCCCAAGACCCCAAAATAAAATGAGTTATCACCGCAATAATAAAAATCG
AAATGCGGAGAATGCATCCTATATCCACGTTCAAAGAGATGCTGTCAGGACTGTCGCGTTGAATGCACCT
TCCCGCAGCAGGCCCACGCATGGGTCCTACAATAAAGTCCATGCTAACAGGGAACCCAAACCCAACCTCA
GTCCAGACAAATATACGTCAACATCATATAATGATTCAGCCTGGCGAAAACGAATTCCTTTTTCAAAAAC
ATATTCAAAAAGTGAAAAGATATATCCAGAGCCAAGAAGAAATGGGAGCAAGTAA

Translation (414 aa):
MEMQQNCSISCFWETQPLGCVKISCIFYHSKPRNINGLFLPPSSNITLQKEIQEGIPLQSQSQEPLKPQE
NISRPIHHPLVLKTNFEEEEEVDEQNDASSLWTKTPEEIEEKRAIKEMCYKSGEYYRFHTPPDILSSKSM
TPTAEKQLEKPLENGSELQEGDSLTVPTKLSQYERQGEIKTSLHGKPKTDIAAFENGGGDCYVPQRVIFL
GVDESEALTEEKEITISKCSNTKDNKDSPHPKHSLTTRLVPTTHVLNATENISMKCREDPSSMNDVQPVK
KPHFKGVKKRKWIYDEPQNFPNSGMQRAVQAPRPQNKMSYHRNNKNRNAENASYIHVQRDAVRTVALNAP
SRSRPTHGSYNKVHANREPKPNLSPDKYTSTSYNDSAWRKRIPFSKTYSKSEKIYPEPRRNGSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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