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Report for CCDS9054.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9054.1 Public Homo sapiens 12 NTN4 24 110 108 CCDS HistoryNCBI Gene:59277Re-query CCDS DB by CCDS ID:9054.1Re-query CCDS DB by GeneID:59277See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9054.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343702.9 ENSP00000340998.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000343702.9Link to Ensembl Protein Viewer:ENSP00000340998.4Re-query CCDS DB by Nucleotide ID:ENST00000343702Re-query CCDS DB by Protein ID:ENSP00000340998
Original member Current member NCBI NM_021229.4 NP_067052.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021229.4Link to Protein Sequence:NP_067052.2Re-query CCDS DB by Nucleotide ID:NM_021229Re-query CCDS DB by Protein ID:NP_067052Link to BLAST:NP_067052.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067052.2 628 Q9HB63-1 628 100% 0 0

Chromosomal Locations for CCDS 9054.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 95659086 95659222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95665810 95665980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95670078 95670146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95682707 95682822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95683498 95683711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95710441 95710629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95713212 95713338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95737866 95738144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95786939 95787468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95790255 95790309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1887 nt):
ATGGGGAGCTGCGCGCGGCTGCTGCTGCTCTGGGGCTGCACGGTGGTGGCCGCAGGACTGAGTGGAGTAG
CTGGAGTGAGTTCCCGCTGTGAAAAAGCCTGCAACCCTCGGATGGGAAATTTGGCTTTGGGGCGAAAACT
CTGGGCAGACACCACCTGCGGTCAGAATGCTACCGAACTGTACTGCTTCTACAGTGAGAACACGGATCTG
ACTTGTCGGCAGCCCAAATGTGACAAGTGCAATGCTGCCTATCCTCACCTGGCTCACCTGCCATCTGCCA
TGGCAGACTCATCCTTCCGGTTTCCTCGCACATGGTGGCAGTCTGCGGAGGATGTGCACAGAGAAAAGAT
CCAGTTAGACCTGGAAGCTGAATTCTACTTCACTCACCTAATTGTGATGTTCAAGTCCCCCAGGCCGGCT
GCCATGGTGCTGGACCGCTCCCAGGACTTTGGGAAAACATGGAAGCCTTATAAGTACTTTGCGACTAACT
GCTCCGCTACATTTGGCCTGGAAGATGATGTTGTCAAGAAGGGCGCTATTTGTACTTCTAAATACTCCAG
TCCTTTTCCATGCACTGGAGGAGAGGTTATTTTCAAAGCTTTGTCACCACCATACGATACAGAGAACCCT
TACAGTGCCAAAGTTCAGGAGCAGCTGAAGATCACCAACCTTCGCGTGCAGCTGCTGAAACGACAGTCTT
GTCCCTGTCAGAGAAATGACCTGAACGAAGAGCCTCAACATTTTACACACTATGCAATCTATGATTTCAT
TGTCAAGGGCAGCTGCTTCTGCAATGGCCACGCTGATCAATGCATACCTGTTCATGGCTTCAGACCTGTC
AAGGCCCCAGGAACATTCCACATGGTCCATGGGAAGTGTATGTGTAAGCACAACACAGCAGGCAGCCACT
GCCAGCACTGTGCCCCGTTATACAATGACCGGCCATGGGAGGCAGCTGATGGCAAAACGGGGGCTCCCAA
CGAGTGCAGAACCTGCAAGTGTAATGGGCATGCTGATACCTGTCACTTCGACGTTAATGTGTGGGAGGCA
TCAGGGAATCGTAGTGGTGGTGTCTGTGATGACTGTCAGCACAACACAGAAGGACAGTATTGCCAGAGGT
GCAAGCCAGGCTTCTATCGTGACCTGCGGAGACCCTTCTCAGCTCCAGATGCTTGCAAACCGTGTTCCTG
CCATCCAGTAGGATCAGCTGTCCTTCCTGCCAACTCAGTGACCTTCTGCGACCCCAGCAATGGTGACTGC
CCTTGCAAGCCTGGGGTGGCAGGGCGACGTTGTGACAGGTGCATGGTGGGATACTGGGGCTTCGGAGACT
ATGGCTGTCGACCATGTGACTGTGCGGGGAGCTGTGACCCTATCACCGGAGACTGCATCAGCAGCCACAC
AGACATAGACTGGTATCATGAAGTTCCTGACTTCCGTCCCGTGCACAATAAGAGCGAACCAGCCTGGGAG
TGGGAGGATGCGCAGGGGTTTTCTGCACTTCTACACTCAGGTAAATGCGAATGTAAGGAACAGACATTAG
GAAATGCCAAGGCATTCTGTGGAATGAAATATTCATATGTGCTAAAAATAAAGATTTTATCAGCTCATGA
TAAAGGTACTCATGTTGAGGTCAATGTGAAGATTAAAAAGGTCTTAAAATCTACCAAACTGAAGATTTTC
CGAGGAAAGCGAACATTATATCCAGAATCATGGACGGACAGAGGATGCACTTGTCCAATCCTCAATCCTG
GTTTGGAATACCTTGTAGCAGGACATGAGGATATAAGAACAGGCAAACTAATTGTGAATATGAAAAGCTT
TGTCCAGCACTGGAAACCTTCTCTTGGAAGAAAAGTCATGGATATTTTAAAAAGAGAGTGCAAGTAG

Translation (628 aa):
MGSCARLLLLWGCTVVAAGLSGVAGVSSRCEKACNPRMGNLALGRKLWADTTCGQNATELYCFYSENTDL
TCRQPKCDKCNAAYPHLAHLPSAMADSSFRFPRTWWQSAEDVHREKIQLDLEAEFYFTHLIVMFKSPRPA
AMVLDRSQDFGKTWKPYKYFATNCSATFGLEDDVVKKGAICTSKYSSPFPCTGGEVIFKALSPPYDTENP
YSAKVQEQLKITNLRVQLLKRQSCPCQRNDLNEEPQHFTHYAIYDFIVKGSCFCNGHADQCIPVHGFRPV
KAPGTFHMVHGKCMCKHNTAGSHCQHCAPLYNDRPWEAADGKTGAPNECRTCKCNGHADTCHFDVNVWEA
SGNRSGGVCDDCQHNTEGQYCQRCKPGFYRDLRRPFSAPDACKPCSCHPVGSAVLPANSVTFCDPSNGDC
PCKPGVAGRRCDRCMVGYWGFGDYGCRPCDCAGSCDPITGDCISSHTDIDWYHEVPDFRPVHNKSEPAWE
WEDAQGFSALLHSGKCECKEQTLGNAKAFCGMKYSYVLKIKILSAHDKGTHVEVNVKIKKVLKSTKLKIF
RGKRTLYPESWTDRGCTCPILNPGLEYLVAGHEDIRTGKLIVNMKSFVQHWKPSLGRKVMDILKRECK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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