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Report for CCDS90576.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90576.1 Public Mus musculus 9 Scaper 23 108 98 CCDS HistoryNCBI Gene:244891Re-query CCDS DB by CCDS ID:90576.1Re-query CCDS DB by GeneID:244891See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90576.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000214747.1 ENSMUSP00000149050.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214747.1Link to Ensembl Protein Viewer:ENSMUSP00000149050.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214747Re-query CCDS DB by Protein ID:ENSMUSP00000149050
Original member Current member NCBI NM_001357652.1 NP_001344581.1 Accepted alive Link to Nucleotide Sequence:NM_001357652.1Link to Protein Sequence:NP_001344581.1Re-query CCDS DB by Nucleotide ID:NM_001357652Re-query CCDS DB by Protein ID:NP_001344581Link to BLAST:NP_001344581.1

Chromosomal Locations for CCDS 90576.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 55550768 55550871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55553471 55553522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55556085 55556276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55580207 55580356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55586219 55586453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55602766 55602921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55609842 55610074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55655905 55656028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55685880 55685995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55743543 55743669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55757993 55758058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55762228 55762364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55807013 55807120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55807606 55807758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55809102 55809183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55815361 55815503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55816654 55816809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55838120 55838260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55858081 55858192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55858408 55858525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55858999 55859074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55859748 55859918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55864404 55864604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55874645 55874904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55883847 55884004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55892172 55892288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55895282 55895382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55912040 55912234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55914900 55914970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55915987 55916104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55919524 55919529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4179 nt):
ATGATGGCTTCCTTCCAGCGCTCCAATAGTCATGACAAAGTGAGAAGAATTGTTGCTGAGGAGGGTCGTA
CCGCAAGAAACTTGATAGCTTGGAGTGTTCCACTAGAAAGCAAAGATGATGATGGAAAACCGAAATGTCA
AACTGGTGGAAAATCTAAGAGGACAATTCAAGGCACTCATAAAACCACTAAACAGAATACTGCAGTAGAA
TGTAAAATAACATCCACAACTGGAGAGAAGCATTTTGATAAAAGTCCTACAAAAACAAGGCACCCAAGAA
AAATTGACTTAAGAGCTCGCTACTGGGCATTTCTTTTTGACAATCTTCGCCGGGCAGTAGATGAAATCTA
TGTGACTTGTGAATCAGATCAGAGTGTGGTGGAGTGTAAGGAGGTGTTAATGATGCTGGATTACTATGTG
AGAGATTTCAAAGCATTGATTGACTGGATTCAACTTCAGGAAAAGTTAGAGAAGACAGATGCTCAAAGCA
GACCAACCTCACTGGCGTGGGAAGTAAAGAAGATGTCTCCAGGACGTCATGTGATTCAAAGCCCATCAAC
AGATAGAATGAATGTAACATCAACTGCAAGAAGAAGCTTAAACTTTGGGAGTTTACCTGGTGCAGTAACT
GCCCCATGTCTGGCTCCCACAGGTGTCAGTTGGGCTGACAAGGTAAAGGCTCATCATACTGGTTCTGCTC
CTCCTGAGGCCACACCTGCTCAATCCTGTGCACCAATGACAGTGCAAAAGACGTCCCGGAAAAATGAACG
GAAAGATGCTGAGGGTTGGGAGACTGTTCAGAGAGGTCGGCCAGTGCGTTCCCGATCGACAGCAGTTATA
CCTAAAGTTTCACTAGTGACAGAAACCTTAAGGTCAAAGGATGACAGTGATAAGGAAAACATATGCCTTT
TACCTGAAGAAAGCATACAGAAAGGAAAACTTGAAGACAGATGTTCTACTGTTGAATCGTTATCCAAAGA
CTCATTATTACATTCTTCTGACCATCCTCTTTCTGAGAGAACTCAGTTCACAGTGTGTATATTGGATGAT
GTCAAGAATTCTGGTAGTAGTCAAGACAGTTCAGTGCATACTTCTGAAATACCAGCTATTGACAGTGATG
CAGTATGTGTTGCTCCACAAAACACCACAGCTTTGCCAACAGACAGAGTTCCAGCGGAGACAACAGGAAT
GGTGACTGAGATGACGGACCCTTCAGACATTTCAAATTCTATGGCAGAAGTTCTCGCTAAAAAAGAAGAG
CTAGCAGATCGTCTAGAAAAGGCCAATGAAGAAGCCATCGCCAGTGCTATTGCTGAAGAAGAACAATTAA
CCAGAGAAATTGAAGCTGAAGAAAACAATGACATTAACATCGAGACTGACAACGACAGTGACTTTTCTGC
CAGTATGGGCAGTGGGAGTCTATCTTTCTGTGGTGTGTCTCTGGACTGGAATGATGTTCTCGCAGATTAT
GAAGCTCGTGAATCATGGCGTCAAAATACATCCTGGGGAGATATTGTAGAAGAGGAGCCTGCCAGACTTC
CAGGGCATGGAATTCACATGCATGAAAAACTTTCATCACCTTCTCGTAAAAGGACAATCGCAGAATCTAA
AAAGAAATATGAAGAAAAACACATGAAAGCTCAACAGTTAAGGGAAAAGCTACGCGAAGAGAAGACACTA
AAGCTTCAAAAGTTGTTAGAAAGGGAGAAAGATGTCCGAAAGTGGAAGGAAGAATTACTAGATCAACGAC
GTAGGATGATGGAAGAGAAATTACTTCATGCAGAATTTAAACGAGAGGTACAGCTACAAGCTATTGTGAA
GAAAGCTCAAGAGGAAGAAGCTAAGGTTAATGAGATTGCCTTCATAAATACCCTTGAAGCTCAGAATAAA
CGTCACGATGTTTTATCAAAACTGAAGGAATATGAGCAGAGGCTTAATGAATTGCAGGAAGAACGTCAGA
GAAGACAAGAAGAAAAGCAAGCTCGTGATGAGGCTGTGCAGGAACGTAAGAGAGCCTTGGAGGCAGAAAG
GCAGGCCCGTGTAGAGGAATTATTGATGAAGAGGAAAGAGCAAGAAGCCCGAATTGAGCAACAGAGGCAA
GAGAAGGAGAAAGCTCGTGAAGATGCAGCCCGGGAAAGAGCAAGAGACAGGGAAGAACGGTTGGCAGCGC
TCACAGCAGCTCAGCAAGAAGCTATGGAAGAGCTGCAGAAAAAAATTCAGCTCAAGCATGATGAAAGCAT
TCGAAGGCACATGGAACAGATTGAGCAAAGGAAAGAAAAAGCTGCTGAATTAAGCAGTGGGCGGCATGCA
AGCACCGATTACGCCCCTAAACTGACCCCTTATGAAAGAAAGAAGCAGTGTTCTCTCTGCAATGTCCTGA
TCGCTTCTGAAGTATATCTCTTTAGCCACATTAAAGGGAAAAAACATCAGCAGGCTGTGAGAGAGAATAG
CAGTATCCAGGGCCGTGAACTTTCTGATGAGGAAGTGGAACATCTGTCTTTGAAGAAGTATGTTGTTGAC
ATTGTGATTGAAAGTGCAGCTCCACCAGAGCCTGTAAAAGATGGAGAAGAACGGCAAAAGAATAAGAAAA
AAGCTAAAAAGATAAAAGCACGGATGAACATCAGGGCGAAAGAATATGAGAATTTAGTGGAAACCAAAAA
TTCTGGCTCCGAGTCACCTTATAAAGCAAAGCTTCAGAGATTAACCAAAGATCTTGTAAAACAACTTCAA
GTACAAGACAGTGGCTCTTGGGTAAATAATAAGGCTTCAGCTTTGGATCGGACCCTTGGTGAGATTGCTA
GAATATTGGAGAAAGAGAATGTGCCAGATCAGATTTCGTTTCAAGTTGCTGGTGGATTAACAGCCCTTGA
AAACATCCTTCAAGTAGTGACTCCAGCCACAAACATGAACACGGTTTCACGAATTCCTCCTAAGTCTCTC
TGCAATGCAATCAATGTTTACAGCCTCGCCTGCAATAACTGCTCAGAAAACTGCACTGATGTTCTGTTTA
GTAACAAGATTACCTTCTTAATGGACCTCCTGATACACCAATTGACGGTTTATGTTCCAGATGAAAATAA
TGCTGTTCTAGGAAGAAATACAAATAAACAAGTTTTTGAAGGCTTGACGACTGGACTTCTCAGAGCTGGT
GCTGTGGTTTTTAGCTGTCTGATTGCCAACCGACCAGATGGAAACAGCCGTCCAGCTACACCAAAAATAT
CAACACAGGAAATGAAAAACAAACCCTCACAAGGTGATGCTTTTAACAGTCGAGTGCAAGACCTTATCAG
CTATGTGGTGAACATGGGTCTGATTGACAGACTGCATGGCTGCTTCCTCTCAGTGCAAGGCCCAGTGGAT
GAGAATCCCAAAATGGCCACATTTCTGCAGCACGCCGCAGGCTTCCTACGTGGGATGTGTATGCTATGCT
TTGCTGTCACTGGAAGGTCCTCCAGCATATTTGACAATAATCACCAGGATCCCACAGGGCTGACAGCTGC
TCTTCAGGCCACAGACTTGGCTGGAGTTCTACATATGCTCTACTGTATCCTCTTCCACGGCACCATCTCA
GACGCCGGCACGAGTCCCAAGGACAGTTACACCCAGAACACCATCCAAGTAGCCATTCAGAGTTTACGTT
TCTTCAATAGCTTTGCAATTCTTGATTTGTCTGCTTTTCAGTCTGTTGTAGGGGCAGAGGGCTTGTCCCT
TGCATTCCGGCACATGGCTAGCTCCTTGCTAGGCCACTGCAGCCAAGTGTCCTGTGAAAGCCTCCTCCAT
GAGGTCATCGTCTGTGTGGGCTACTTCACTGTCAACCACCCAGATAACCAGGTGATTGTTCAGTCCGGCC
GCCACCCAACGGTGCTGCAGAAGCTCTGCCAGCTGCCTTTCCAGTATTTCAGTGACCCGAGGCTCATCAA
AGTGCTGTTTCCTTCGCTTATCACCGCGTGTCACAACAACCATCAGAACAAGCTCATTCTGGAGCAAGAG
ATGAGCTGTGTTTTACTGGCCACATTCATCCAGGACTTTGCACAGACTCCGGGTCACGTGGATAACCAGT
CTTCAAGTCTCAAAGGAAAATTCCAGAACCCCGGGAACTACCTGGAACTGGCTAACAGATTTCCTCAGCA
GGCCTGGGAAGAAGCCCGGCAATTTTTCTTGAAAAAAGAAAAAAAATAA

Translation (1392 aa):
MMASFQRSNSHDKVRRIVAEEGRTARNLIAWSVPLESKDDDGKPKCQTGGKSKRTIQGTHKTTKQNTAVE
CKITSTTGEKHFDKSPTKTRHPRKIDLRARYWAFLFDNLRRAVDEIYVTCESDQSVVECKEVLMMLDYYV
RDFKALIDWIQLQEKLEKTDAQSRPTSLAWEVKKMSPGRHVIQSPSTDRMNVTSTARRSLNFGSLPGAVT
APCLAPTGVSWADKVKAHHTGSAPPEATPAQSCAPMTVQKTSRKNERKDAEGWETVQRGRPVRSRSTAVI
PKVSLVTETLRSKDDSDKENICLLPEESIQKGKLEDRCSTVESLSKDSLLHSSDHPLSERTQFTVCILDD
VKNSGSSQDSSVHTSEIPAIDSDAVCVAPQNTTALPTDRVPAETTGMVTEMTDPSDISNSMAEVLAKKEE
LADRLEKANEEAIASAIAEEEQLTREIEAEENNDINIETDNDSDFSASMGSGSLSFCGVSLDWNDVLADY
EARESWRQNTSWGDIVEEEPARLPGHGIHMHEKLSSPSRKRTIAESKKKYEEKHMKAQQLREKLREEKTL
KLQKLLEREKDVRKWKEELLDQRRRMMEEKLLHAEFKREVQLQAIVKKAQEEEAKVNEIAFINTLEAQNK
RHDVLSKLKEYEQRLNELQEERQRRQEEKQARDEAVQERKRALEAERQARVEELLMKRKEQEARIEQQRQ
EKEKAREDAARERARDREERLAALTAAQQEAMEELQKKIQLKHDESIRRHMEQIEQRKEKAAELSSGRHA
STDYAPKLTPYERKKQCSLCNVLIASEVYLFSHIKGKKHQQAVRENSSIQGRELSDEEVEHLSLKKYVVD
IVIESAAPPEPVKDGEERQKNKKKAKKIKARMNIRAKEYENLVETKNSGSESPYKAKLQRLTKDLVKQLQ
VQDSGSWVNNKASALDRTLGEIARILEKENVPDQISFQVAGGLTALENILQVVTPATNMNTVSRIPPKSL
CNAINVYSLACNNCSENCTDVLFSNKITFLMDLLIHQLTVYVPDENNAVLGRNTNKQVFEGLTTGLLRAG
AVVFSCLIANRPDGNSRPATPKISTQEMKNKPSQGDAFNSRVQDLISYVVNMGLIDRLHGCFLSVQGPVD
ENPKMATFLQHAAGFLRGMCMLCFAVTGRSSSIFDNNHQDPTGLTAALQATDLAGVLHMLYCILFHGTIS
DAGTSPKDSYTQNTIQVAIQSLRFFNSFAILDLSAFQSVVGAEGLSLAFRHMASSLLGHCSQVSCESLLH
EVIVCVGYFTVNHPDNQVIVQSGRHPTVLQKLCQLPFQYFSDPRLIKVLFPSLITACHNNHQNKLILEQE
MSCVLLATFIQDFAQTPGHVDNQSSSLKGKFQNPGNYLELANRFPQQAWEEARQFFLKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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