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Report for CCDS90893.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90893.1 Public Homo sapiens 1 PIGV 24 110 108 CCDS HistoryNCBI Gene:55650Re-query CCDS DB by CCDS ID:90893.1Re-query CCDS DB by GeneID:55650See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90893.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000693629.1 ENSP00000509280.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000693629.1Link to Ensembl Protein Viewer:ENSP00000509280.1Re-query CCDS DB by Nucleotide ID:ENST00000693629Re-query CCDS DB by Protein ID:ENSP00000509280
Original member Current member NCBI NM_001374486.1 NP_001361415.1 Accepted alive Link to Nucleotide Sequence:NM_001374486.1Link to Protein Sequence:NP_001361415.1Re-query CCDS DB by Nucleotide ID:NM_001374486Re-query CCDS DB by Protein ID:NP_001361415Link to BLAST:NP_001361415.1

Chromosomal Locations for CCDS 90893.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 26790816 26790893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26797563 26797844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (360 nt):
ATGTGGCCCCAGGACCCATCCCGGAAGGAGGTGCTGAGGTTTGCAGTCAGCTGCCGTATCCTGACTCTGA
TGCTGCAGGTTCTCACCAGGTTTTTGGGCTCCTCCACTCCTATTATGTACTGGTTTCCAGCTCACTTGCT
TCAGGATCAAGAGCCGCTGTTGAGATCCTTAAAGACTGTGCCTTGGAAGCCTCTTGCAGAGGACTCCCCA
CCAGGACAAAAGGTCCCCAGAAATCCTATCATGGGACTTTTGTATCACTGGAAAACCTGTTCTCCAGTCA
CACGATACATTCTAGGCTACTTCCTGACTTACTGGCTCCTGGGACTACTCCTACATTGCAACTTCCTGCC
TTGGACATGA

Translation (119 aa):
MWPQDPSRKEVLRFAVSCRILTLMLQVLTRFLGSSTPIMYWFPAHLLQDQEPLLRSLKTVPWKPLAEDSP
PGQKVPRNPIMGLLYHWKTCSPVTRYILGYFLTYWLLGLLLHCNFLPWT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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