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Report for CCDS90980.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90980.1 Public Homo sapiens 1 MIGA1 24 110 108 CCDS HistoryNCBI Gene:374986Re-query CCDS DB by CCDS ID:90980.1Re-query CCDS DB by GeneID:374986See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90980.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000645756.1 ENSP00000494444.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000645756.1Link to Ensembl Protein Viewer:ENSP00000494444.1Re-query CCDS DB by Nucleotide ID:ENST00000645756Re-query CCDS DB by Protein ID:ENSP00000494444
Original member Current member NCBI NM_001394573.1 NP_001381502.1 Accepted alive Link to Nucleotide Sequence:NM_001394573.1Link to Protein Sequence:NP_001381502.1Re-query CCDS DB by Nucleotide ID:NM_001394573Re-query CCDS DB by Protein ID:NP_001381502Link to BLAST:NP_001381502.1

Chromosomal Locations for CCDS 90980.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 77779656 77779736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77783238 77783351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77801331 77801508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77803270 77803406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77806975 77807101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77813734 77813867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77815108 77815231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77843307 77843407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77858938 77859056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77859314 77859386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77860040 77860126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77861224 77861322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77863894 77864028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77866338 77866391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77868248 77868442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1758 nt):
ATGTCAGACTGCTGCTCAGCGCCAGGCATCAGCTGGGAAGCTGGCGTGGGCAGGCCAGCTGTACCTGGCC
TGGAGCTCCAGATTAGAAGAGGAGCCATGTCAGAAGAAACAGTAAGTGAATCACAGTTTTCCTTGAAGAC
AGCAGCGCTAAGAGTGTTTGATCTTCCTCTGACTTGGTACTATTCTCTCTCCCAGATCAAATTTTCTCCG
GTGGCTAAAAAGTTGTTTGTGGTAACTGCAGTGAGTGCTATATCTGTAATTTTTCTGGCTCATCACTTTA
AAAGAAAACGTGGAAAGAAGAAAGGAAAAATATTACCATGGGAACCAGAGCACCTCATACTTGAATACAC
TAAAAGAGCAGCATCAGACAAAGGTTCAAGTTGTTCCAGTAGCAGACAGAATTTGACATTATCTTTAAGT
TCTACCAAAGACAAAGGATCTCAAGTTTGTAACTATGCTAATGGAGGACTTTTCAGTAAATATTCAGGTT
CTGCACAGAGTTTGGCCTCTGTCCAGAGTGTCAATTCTTGTCATAGCTGCGCTTGTGGCAATTCTAATTC
CTGGGACAAAGCAGATGAAGATGATATTAAACTTGTTAATATTCCTGTGACTACTCCAGAGAACTTATAC
TTAATGGGTATGGAATTGTTTGAAGAGGCATTGCGTCGATGGGAACAAGCTCTGACCTTTCGCAATAGAC
AGGCTGAAGATGAAGCCTGTGGTTCCATTAAACTGGGTGCAGGAGATGCCATTGCTGAAGAAAATGTAGA
TGATATTATTAGTACTGAATTTATCCATAAACTCGAAGCTCTGCTGCAAAGAGCCTATCGTCTCCAAGAG
GAGTTTGAAGCTACCCTTGGGGCATCTGATCCTAATTCCCTTGCTGATGATATTGATAAAGATACAGATA
TCACCATGAAGGGTAATGTGGAAGACTTTGGCCTGCGAGACACCTTGAGCATCGCATCCACGGATTCCTT
TGCTTCCGCAGCAGAGCTTGCAGAACACAGAGAAGTACGGCATACCTACAGCCTGGAGTCCCTTTGTCAC
TGCCCATTTTACGAGGAAGCCATGCATTTAGTTGAAGAAGGAAAAATTTACTCCAGAGTACTGAGAACTG
AAATGTTGGAGTGCCTAGGAGACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACAGGCTTTTCAGGT
AATTCTTTCAGAATCAGCTAACAGGATATTCCTCGCTGAGAGCGGAAGGAAAATTTTATCAGCTTTAATT
GTGAAAGCACGAAAGAATCCAAAGAAGTTTGAAGATGTTTTTGATGAAATGATCTATTTTTTAGAGCAGA
CCGATCACTGGGGTAGTACTGAAATGGAACTTGCTGCTAGAGGGGTGAAAAATCTAAATTTTTATGATGT
TGTTCTGGATTTTATATTAATGGACTCCTTTGAAGATTTGGAAAACCCACCCACATCCATACAGAATGTA
GTAAATAATCGATGGCTAAACTCATCCTTCAAAGAAACAGCTGTGGCTTCAAGTTGTTGGTCGGTGCTGA
AACAGAAAAGACAACAGATGAAGACGGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAATGGCATGATCT
CAGCTCACTACAACCTCTGCCTCCCAGGTTCAAGCGATTCTTCTGCCTCAGCCTTTCAAGTAGCTGGGAT
TACAGGCGCTTGCCACCATGTCCGGCTAATTTGTATATTTTTGGCAAAGATGGGGTTTCATCATGTTGGC
CAGGCTAA

Translation (585 aa):
MSDCCSAPGISWEAGVGRPAVPGLELQIRRGAMSEETVSESQFSLKTAALRVFDLPLTWYYSLSQIKFSP
VAKKLFVVTAVSAISVIFLAHHFKRKRGKKKGKILPWEPEHLILEYTKRAASDKGSSCSSSRQNLTLSLS
STKDKGSQVCNYANGGLFSKYSGSAQSLASVQSVNSCHSCACGNSNSWDKADEDDIKLVNIPVTTPENLY
LMGMELFEEALRRWEQALTFRNRQAEDEACGSIKLGAGDAIAEENVDDIISTEFIHKLEALLQRAYRLQE
EFEATLGASDPNSLADDIDKDTDITMKGNVEDFGLRDTLSIASTDSFASAAELAEHREVRHTYSLESLCH
CPFYEEAMHLVEEGKIYSRVLRTEMLECLGDSDFLAKLHCIRQAFQVILSESANRIFLAESGRKILSALI
VKARKNPKKFEDVFDEMIYFLEQTDHWGSTEMELAARGVKNLNFYDVVLDFILMDSFEDLENPPTSIQNV
VNNRWLNSSFKETAVASSCWSVLKQKRQQMKTESHSVAQAGVQWHDLSSLQPLPPRFKRFFCLSLSSSWD
YRRLPPCPANLYIFGKDGVSSCWPG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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