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Report for CCDS90985.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90985.1 Public Homo sapiens 1 IFI44L 24 110 108 CCDS HistoryNCBI Gene:10964Re-query CCDS DB by CCDS ID:90985.1Re-query CCDS DB by GeneID:10964See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90985.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000679998.1 ENSP00000504938.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679998.1Link to Ensembl Protein Viewer:ENSP00000504938.1Re-query CCDS DB by Nucleotide ID:ENST00000679998Re-query CCDS DB by Protein ID:ENSP00000504938
Original member Current member EBI ENST00000680110.1 ENSP00000505974.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000680110.1Link to Ensembl Protein Viewer:ENSP00000505974.1Re-query CCDS DB by Nucleotide ID:ENST00000680110Re-query CCDS DB by Protein ID:ENSP00000505974
Original member Current member EBI ENST00000679848.1 ENSP00000506000.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679848.1Link to Ensembl Protein Viewer:ENSP00000506000.1Re-query CCDS DB by Nucleotide ID:ENST00000679848Re-query CCDS DB by Protein ID:ENSP00000506000
Original member Current member EBI ENST00000459784.6 ENSP00000506096.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000459784.6Link to Ensembl Protein Viewer:ENSP00000506096.1Re-query CCDS DB by Nucleotide ID:ENST00000459784Re-query CCDS DB by Protein ID:ENSP00000506096
Original member Current member EBI ENST00000681613.1 ENSP00000506384.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681613.1Link to Ensembl Protein Viewer:ENSP00000506384.1Re-query CCDS DB by Nucleotide ID:ENST00000681613Re-query CCDS DB by Protein ID:ENSP00000506384
Original member Current member EBI ENST00000680295.1 ENSP00000506722.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000680295.1Link to Ensembl Protein Viewer:ENSP00000506722.1Re-query CCDS DB by Nucleotide ID:ENST00000680295Re-query CCDS DB by Protein ID:ENSP00000506722
Original member Current member NCBI NM_001375647.1 NP_001362576.1 Accepted alive Link to Nucleotide Sequence:NM_001375647.1Link to Protein Sequence:NP_001362576.1Re-query CCDS DB by Nucleotide ID:NM_001375647Re-query CCDS DB by Protein ID:NP_001362576Link to BLAST:NP_001362576.1
Original member Current member NCBI NM_001375648.1 NP_001362577.1 Accepted alive Link to Nucleotide Sequence:NM_001375648.1Link to Protein Sequence:NP_001362577.1Re-query CCDS DB by Nucleotide ID:NM_001375648Re-query CCDS DB by Protein ID:NP_001362577Link to BLAST:NP_001362577.1
Original member Current member NCBI NM_001375649.1 NP_001362578.1 Accepted alive Link to Nucleotide Sequence:NM_001375649.1Link to Protein Sequence:NP_001362578.1Re-query CCDS DB by Nucleotide ID:NM_001375649Re-query CCDS DB by Protein ID:NP_001362578Link to BLAST:NP_001362578.1
Original member Current member NCBI NM_001375650.1 NP_001362579.1 Accepted alive Link to Nucleotide Sequence:NM_001375650.1Link to Protein Sequence:NP_001362579.1Re-query CCDS DB by Nucleotide ID:NM_001375650Re-query CCDS DB by Protein ID:NP_001362579Link to BLAST:NP_001362579.1

Chromosomal Locations for CCDS 90985.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 78635388 78635489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78637032 78637203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78641021 78641121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78641435 78641609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78641775 78641809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (585 nt):
ATGTTGTGTGACACTATGGGGCTAGATGGGGCAGAAGGAGCAGGACTGTGCATGGATGACATTCCCCACA
TCTTAAAAGGTTGTATGCCAGACAGATATCAGTTTAATTCCCGTAAACCAATTACACCTGAGCATTCTAC
TTTTATCACCTCTCCATCTCTGAAGGACAGGATTCACTGTGTGGCTTATGTCTTAGACATCAACTCTATT
GACAATCTCTACTCTAAAATGTTGGCAAAAGTGAAGCAAGTTCACAAAGAAGTATTAAACTGTGGTATAG
CATATGTGGCCTTGCTTACTAAAGTGGATGATTGCAGTGAGGTTCTTCAAGACAACTTTTTAAACATGAG
TAGATCTATGACTTCTCAAAGCCGGGTCATGAATGTCCATAAAATGCTAGGCATTCCTATTTCCAATATT
TTGATGGTTGGAAATTATGCTTCAGATTTGGAACTGGACCCCATGAAGGATATTCTCATCCTCTCTGCAC
TGAGGCAGATGCTGCGGGCTGCAGATGATTTTTTAGAAGATTTGCCTCTTGAGGAAACTGGTGCAATTGA
GAGAGCGTTACAGCCCTGCATTTGA

Translation (194 aa):
MLCDTMGLDGAEGAGLCMDDIPHILKGCMPDRYQFNSRKPITPEHSTFITSPSLKDRIHCVAYVLDINSI
DNLYSKMLAKVKQVHKEVLNCGIAYVALLTKVDDCSEVLQDNFLNMSRSMTSQSRVMNVHKMLGIPISNI
LMVGNYASDLELDPMKDILILSALRQMLRAADDFLEDLPLEETGAIERALQPCI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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