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Report for CCDS91004.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91004.1 Public Homo sapiens 1 CCDC18 24 110 108 CCDS HistoryNCBI Gene:343099Re-query CCDS DB by CCDS ID:91004.1Re-query CCDS DB by GeneID:343099See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 91004.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000690025.1 ENSP00000510597.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000690025.1Link to Ensembl Protein Viewer:ENSP00000510597.1Re-query CCDS DB by Nucleotide ID:ENST00000690025Re-query CCDS DB by Protein ID:ENSP00000510597
Original member Current member NCBI NM_001378204.1 NP_001365133.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001378204.1Link to Protein Sequence:NP_001365133.1Re-query CCDS DB by Nucleotide ID:NM_001378204Re-query CCDS DB by Protein ID:NP_001365133Link to BLAST:NP_001365133.1

Chromosomal Locations for CCDS 91004.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 93183362 93183495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93183978 93184146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93186345 93186503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93192000 93192106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93193616 93193744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93201892 93201988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93205510 93205631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93207107 93207398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93210802 93210926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93212101 93212261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93214743 93214966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93216636 93216746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93217738 93217869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93221609 93221743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93221859 93221936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93226333 93226449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93232426 93232593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93236248 93236390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93239310 93239473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93239683 93239896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93246105 93246204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93246838 93246954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93254471 93254614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93256335 93256538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93258748 93258885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93264701 93264901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93270347 93270814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93278463 93278477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4368 nt):
ATGGAATCTAGTTCATCAGACTACTATAATAAAGACAATGAAGAGGAAAGTTTGCTTGCAAATGTTGCTT
CC
TTAAGACATGAACTGAAGATAACAGAATGGAGTTTGCAGAGTTTAGGGGAAGAGTTATCCAGTGTTAG
T
CCAAGTGAAAATTCTGATTATGCCCCTAATCCTTCAAGGTCTGAAAAGCTAATTTTGGATGTTCAGCCT
AGC
CACCCTGGACTTTTGAATTATTCACCTTATGAAAACGTCTGTAAAATATCTGGTAGCAGCACTGATT
TT
CAAAAAAAGCCAAGAGATAAGATGTTTTCATCTTCTGCCCCTGTGGATCAGGAGATTAAAAGCCTTCG
A
GAGAAACTAAATAAACTTAGGCAACAGAATGCTTGTTTGGTCACACAGAATCATTCCTTAATGACTAAA
TTT
GAATCTATTCACTTTGAATTAACACAGTCAAGAGCAAAAGTTTCTATGCTTGAGTCTGCTCAACAGC
AG
GCAGCCAGTGTCCCAATCTTAGAAGAACAGATTATAAATTTGGAAGCAGAGGTTTCAGCTCAAGATAA
A
GTTTTGAGAGAGGCAGAAAATAAGCTGGAACAGAGCCAGAAAATGGTAATTGAAAAGGAACAGAGTTTG
CAG
GAGTCCAAAGAGGAATGTATAAAATTAAAGGTGGACTTACTTGAACAAACCAAACAAGGAAAAAGAG
CT
GAACGACAAAGGAATGAAGCACTATATAATGCCGAAGAGCTGAGTAAAGCTTTCCAACAATATAAAAA
A
AAAGTGGCTGAAAAACTGGAAAAGGTTCAAGCTGAAGAAGAAATATTAGAGAGAAATCTAACTAACTGT
GAA
AAAGAAAATAAAAGGCTACAAGAAAGGTGTGGTCTATATAAAAGTGAACTTGAAATTCTGAAAGAGA
AA
TTAAGGCAGTTAAAAGAAGAAAATAACAACGGAAAAGAAAAATTAAGGATCATGGCAGTGAAAAATTC
A
GAAGTCATGGCACAACTAACTGAATCTAGACAAAGTATTTTGAAGCTAGAGAGTGAGTTAGAGAACAAA
GAC
GAAATACTTAGAGACAAATTTTCTTTAATGAATGAAAACCGAGAATTAAAGGTCCGTGTTGCAGCAC
AG
AATGAGCGACTAGATTTATGTCAACAAGAAATTGAAAGTTCAAGGGTAGAACTAAGAAGTTTGGAAAA
G
ATTATATCCCAGTTGCCATTAAAAAGAGAATTATTTGGCTTTAAATCATATCTTTCTAAATACCAGATG
AGT
AGCTTCTCAAACAAGGAAGACCGTTGCATTGGCTGCTGTGAGGCAAATAAATTGGTGATTTCGGAAT
TG
AGAATTAAGCTTGCAATAAAAGAGGCAGAAATTCAAAAGCTTCATGCAAACCTGACTGCAAATCAGTT
A
TCTCAGAGTCTTATTACTTGTAATGACAGCCAAGAAAGTAGCAAATTAAGTAGTTTAGAAACAGAACCT
GTA
AAGCTAGGTGGTCATCAAGTAGCAGAAAGCGTAAAAGATCAAAATCAACATACTATGAACAAGCAAT
AT
GAAAAAGAGAGGCAAAGACTTGTTACTGGAATAGAAGAACTACGTACTAAGCTGATACAAATAGAAGC
T
GAAAATTCTGATTTGAAGGTTAACATGGCTCACAGAACTAGTCAGTTTCAGCTGATTCAAGAGGAGCTG
CTA
GAGAAAGCTTCAAACTCCAGCAAACTGGAAAGTGAAATGACAAAGAAATGTTCTCAACTTTTAACTC
TT
GAGAAACAGCTGGAAGAAAAGATAGTTGCTTATTCCTCTATTGCTGCAAAAAATGCAGAACTAGAACA
G
GAGCTTATGGAAAAGAATGAAAAGATAAGGAGTCTAGAAACCAATATTAATACAGAGCATGAGAAAATT
TGT
TTAGCCTTTGAAAAAGCAAAGAAAATTCACTTGGAACAGCATAAAGAAATGGAAAAGCAGATTGAAA
GA
CTTGAAGCTCAACTAGAGAAAAAGGACCAACAATTTAAAGAACAAGAAAAGACTATGTCCATGTTGCA
A
CAAGATATAATATGCAAACAACATCATCTTGAATCACTAGATAGACTCTTGACGGAAAGCAAAGGGGAA
ATG
AAAAAGGAAAATATGAAGAAAGATGAAGCTTTAAAAGCATTACAGAACCAAGTATCTGAAGAAACAA
TC
AAGGTTAGGCAACTAGATTCAGCATTGGAAATTTGTAAGGAAGAACTTGTCTTGCATTTGAATCAATT
G
GAAGGAAATAAGGAAAAGTTTGAAAAACAGTTAAAGAAGAAATCTGAAGAGGTATATTGTTTACAGAAA
GAG
CTAAAGATAAAAAATCACAGTCTTCAAGAGACTTCTGAGCAAAACGTTATTCTACAGCATACTCTTC
AG
CAACAGCAGCAAATGTTACAACAAGAGACAATTAGAAATGGAGAGCTAGAAGATACTCAAACTAAACT
T
GAAAAACAGGTGTCAAAACTGGAACAAGAACTTCAAAAACAAAGGGAAAGTTCAGCTGAAAAGTTGAGA
AAA
ATGGAGGAGAAATGTGAATCAGCTGCACATGAAGCAGATTTGAAAAGGCAAAAAGTGATTGAGCTTA
CT
GGCACTGCCAGGCAAGTAAAGATTGAGATGGATCAGTACAAAGAAGAGCTGTCTAAAATGGAAAAGGA
A
ATAATGCACCTAAAACGAGATGGAGAAAATAAAGCAATGCACCTCTCTCAATTAGATATGATCTTAGAT
CAG
ACAAAGACAGAGCTAGAAAAGAAAACAAATGCTGTAAAGGAGTTAGAAAAGTTACAGCACAGTACTG
AA
ACTGAACTAACAGAAGCCTTGCAAAAACGGGAAGTACTTGAGACTGAACTACAAAATGCTCATGGAGA
A
TTAAAAAGTACTTTAAGACAACTCCAGGAATTGAGAGATGTACTACAGAAGGCTCAATTATCATTAGAG
GAA
AAATACACTACTATAAAGGATCTCACAGCTGAACTTAGAGAATGCAAGATGGAGATTGAAGACAAAA
AG
CAGGAGCTCCTTGAAATGGATCAGGCACTTAAAGAGAGAAATTGGGAACTAAAGCAAAGAGCAGCTCA
G
GTTACACATTTGGATATGACTATTCGTGAGCACAGAGGAGAAATGGAACAAAAAATAATTAAATTAGAA
GGT
ACTCTGGAGAAATCAGAATTGGAACTTAAAGAATGTAACAAACAGATAGAAAGTCTGAATGACAAAT
TA
CAAAATGCTAAAGAACAGCTTCGAGAAAAAGAGTTTATAATGCTACAAAATGAACAGGAGATAAGTCA
A
CTGAAAAAAGAAATTGAAAGAACACAACAAAGGATGAAAGAAATGGAGAGTGTTATGAAAGAGCAAGAA
CAG
TACATTGCCACTCAGTACAAGGAGGCCATAGATTTGGGGCAAGAATTGAGGCTGACCCGGGAGCAGG
TG
CAGAACTCTCATACAGAATTGGCAGAGGCTCGTCATCAGCAAGTCCAAGCACAGAGAGAAATAGAAAG
G
CTCTCTAGTGAACTGGAGGATATGAAGCAACTCTCTAAAGAGAAAGATGCTCATGGAAACCATTTAGCT
GAA
GAACTGGGGGCTTCTAAAGTACGTGAAGCTCATTTAGAAGCAAGAATGCAAGCAGAAATCAAGAAAT
TG
TCAGCAGAAGTAGAATCTCTCAAAGAAGCTTATCATATGGAGATGATTTCACATCAAGAGAACCATGC
A
AAGTGGAAGATTTCTGCTGACTCTCAAAAGTCTTCTGTTCAGCAACTAAACGAACAGTTAGAGAAGGCA
AAA
TTGGAATTAGAAGAAGCTCAGGATACTGTAAGCAATTTGCATCAACAAGTCCAAGATAGGAATGAAG
TA
ATTGAAGCTGCAAATGAAGCATTACTTACTAAAGAATCAGAATTAACCAGATTACAGGCCAAAATTTC
T
GGACATGAAAAGGCAGAAGACATCAAGTTTCTGCCAGCCCCATTTACATCTCCAACAGAAATTATGCCT
GAT
GTTCAAGATCCAAAATTTGCTAAATGTTTTCACACATCTTTTTCCAAGTGTACAAAATTACGTCGCT
CT
ATTAGTGCCAGTGATCTTACTTTCAAAATTCATGGTGATGAAGATCTTTCTGAAGAATTACTACAGGA
C
TTAAAGAAAATGCAATTAGAACAGCCTTCAACATTAGAAGAAAGCCATAAGAATCTGACTTACACCCAG
CCA
GACTCATTTAAACCTCTCACATATAACCTAGAAGCTGATAGTTCTGAGAATAATGACTTTAACACGC
TT
AGTGGGATGCTAAGATACATAAACAAAGAAGTAAGACTATTAAAAAAGTCTTCTATGCAAACAGGTGC
T
GGTTTAAATCAGGGAGAAAATGTGTAA


Translation (1455 aa):
MESSSSDYYNKDNEEESLLANVASLRHELKITEWSLQSLGEELSSVSPSENSDYAPNPSRSEKLILDVQP
S
HPGLLNYSPYENVCKISGSSTDFQKKPRDK
MFSSSAPVDQEIKSLREKLNKLRQQNACLVTQNHSLMTK
F
ESIHFELTQSRAK
VSMLESAQQQAASVPILEEQIINLEAEVSAQDKVLREAENKLEQSQKMVIEKEQSL
Q
ESKEECIKLKVDLLEQTKQGK
RAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEEEILERNLTNC
E
KENKRLQERCGLYKSELEILKEKL
RQLKEENNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESELENK
D
EILRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIISQLP
LKRELFGFKSYLSKYQM
S
SFSNKEDRCIGCCEANKLVISEL
RIKLAIKEAEIQKLHANLTANQLSQSLITCNDSQESSKLSSLETEP
V
KLGGHQV
AESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEEL
L
EKASNSSKLESE
MTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKI
C
LAFEKAKKIHLEQHKEMEKQIER
LEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGE
M
KKENMKKDEALKALQNQVSEETIK
VRQLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQK
E
LKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQ
VSKLEQELQKQRESSAEKLR
K
MEEKCESAAHEADLKRQKVIELTGTA
RQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILD
Q
TKTELEKKTNA
VKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLE
E
KYTTIKDLTAEL
RECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLE
G
TLEKSELELKECNKQ
IESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQE
Q
YIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEK
DAHGNHLA
E
ELGASKVREAHLEARMQAEIKKLSAEVESLKEAYHME
MISHQENHAKWKISADSQKSSVQQLNEQLEKA
K
LELEEAQDTVSNLHQQVQDRNEVIEAANEALLTK
ESELTRLQAKISGHEKAEDIKFLPAPFTSPTEIMP
D
VQDPKFAKCFHTSFSKCTKLRRSISASDLTFKIHGDEDLSEELLQDLKKMQLEQPSTLEESHKNLTYTQ
P
DSFKPLTYNLEADSSENNDFNTLSGMLRYINKEVRLLKKSSMQTGAGLNQ
GENV



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser