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Report for CCDS91316.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91316.1 Public Homo sapiens 10 HPS1 24 110 108 CCDS HistoryNCBI Gene:3257Re-query CCDS DB by CCDS ID:91316.1Re-query CCDS DB by GeneID:3257See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 91316.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000699136.1 ENSP00000514153.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000699136.1Link to Ensembl Protein Viewer:ENSP00000514153.1Re-query CCDS DB by Nucleotide ID:ENST00000699136Re-query CCDS DB by Protein ID:ENSP00000514153
Original member Current member EBI ENST00000699140.1 ENSP00000514157.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000699140.1Link to Ensembl Protein Viewer:ENSP00000514157.1Re-query CCDS DB by Nucleotide ID:ENST00000699140Re-query CCDS DB by Protein ID:ENSP00000514157
Original member Current member NCBI NM_001322478.2 NP_001309407.1 Accepted alive Link to Nucleotide Sequence:NM_001322478.2Link to Protein Sequence:NP_001309407.1Re-query CCDS DB by Nucleotide ID:NM_001322478Re-query CCDS DB by Protein ID:NP_001309407Link to BLAST:NP_001309407.1
Original member Current member NCBI NM_001322479.2 NP_001309408.1 Accepted alive Link to Nucleotide Sequence:NM_001322479.2Link to Protein Sequence:NP_001309408.1Re-query CCDS DB by Nucleotide ID:NM_001322479Re-query CCDS DB by Protein ID:NP_001309408Link to BLAST:NP_001309408.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001309407.1 667 Q92902-2 667 100% 0 0
NP_001309408.1 667 Q92902-2 667 100% 0 0

Chromosomal Locations for CCDS 91316.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 98417564 98417726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98418175 98418257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98420045 98420158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98422369 98422513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98423603 98423668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98423753 98423887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98424313 98424374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98425541 98425720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98425818 98425985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98427215 98427264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98429573 98429642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98430571 98430670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98431131 98431291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98433983 98434091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98435272 98435414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98435635 98435772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98443124 98443240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2004 nt):
ATGAAGTGCGTCTTGGTGGCCACTGAGGGCGCAGAGGTCCTCTTCTACTGGACAGATCAGGAGTTTGAAG
AGAGTCTCCGGCTGAAGTTCGGGCAGTCAGAGAATGAGGAAGAAGAGCTCCCTGCCCTGGAGGACCAGCT
CAGCACCCTCCTAGCCCCGGTCATCATCTCCTCCATGACGATGCTGGAGAAGCTCTCGGACACCTACACC
TGCTTCTCCACGGAAAATGGCAACTTCCTGTATGTCCTTCACCTGTTTGGAGAATGCCTGTTCATTGCCA
TCAATGGTGACCACACCGAGAGCGAGGGGGACCTGCGGCGGAAGCTGTATGTGCTCAAGTACCTGTTTGA
AGTGCACTTTGGGCTGGTGACTGTGGACGGTCATCTTATCCGAAAGGAGCTGCGGCCCCCAGACCTGGCG
CAGCGTGTCCAGCTGTGGGAGCACTTCCAGAGCCTGCTGTGGACCTACAGCCGCCTGCGGGAGCAGGAGC
AGTGCTTCGCCGTGGAGGCCCTGGAGCGACTGATTCACCCCCAGCTCTGTGAGCTGTGCATAGAGGCGCT
GGAGCGGCACGTCATCCAGGCTGTCAACACCAGCCCCGAGCGGGGAGGCGAGGAGGCCCTGCATGCCTTC
CTGCTCGTGCACTCCAAGCTGCTGGCATTCTACTCTAGCCACAGTGCCAGCTCCCTGCGCCCGGCCGACC
TGCTTGCCCTCATCCTCCTGGTTCAGGACCTCTACCCCAGCGAGAGCACAGCAGAGGACGACATTCAGGA
GACAGACAGCTTCTCCCTCCCTGAGGAGTACTTCACACCAGCTCCTTCCCCTGGCGATCAGAGCTCAGGT
AGCACCATCTGGCTGGAGGGGGGCACCCCCCCCATGGATGCCCTTCAGATAGCAGAGGACACCCTCCAAA
CACTGGTTCCCCACTGCCCTGTGCCTTCCGGCCCCAGAAGGATCTTCCTGGATGCCAACGTGAAGGAAAG
CTACTGCCCCCTAGTGCCCCACACCATGTACTGCCTGCCCCTGTGGCAGGGCATCAACCTGGTGCTCCTG
ACCAGGAGCCCCAGCGCGCCCCTGGCCCTGGTTCTGTCCCAGCTGATGGATGGCTTCTCCATGCTGGAGA
AGAAGCTGAAGGAAGGGCCGGAGCCCGGGGCCTCCCTGCGCTCCCAGCCCCTCGTGGGAGACCTGCGCCA
GAGGATGGACAAGTTTGTCAAGAATCGAGGGGCACAGGAGATTCAGAGCACCTGGCTGGAGTTTAAGGCC
AAGGCTTTCTCCAAAAGTGAGCCCGGATCCTCCTGGGAGCTGCTCCAGGCATGTGGGAAGCTGAAGCGGC
AGCTCTGCGCCATCTACCGGCTGAACTTTCTGACCACAGCCCCCAGCAGGGGAGGCCCACACCTGCCCCA
GCACCTGCAGGACCAAGTGCAGAGGCTCATGCGGGAGAAGCTGACGGACTGGAAGGACTTCTTGCTGGTG
AAGAGCAGGAGGAACATCACCATGGTGTCCTACCTAGAAGACTTCCCAGGCTTGGTGCACTTCATCTATG
TGGACCGCACCACTGGGCAGATGGTGGCGCCTTCCCTCAACTGCAGTCAAAAGACCTCGTCGGAGTTGGG
CAAGGGGCCGCTGGCTGCCTTTGTCAAAACTAAGGTCTGGTCTCTGATCCAGCTGGCGCGCAGATACCTG
CAGAAGGGCTACACCACGCTGCTGTTCCAGGAGGGGGATTTCTACTGCTCCTACTTCCTGTGGTTCGAGA
ATGACATGGGGTACAAACTCCAGATGATCGAGGTGCCCGTCCTCTCCGACGACTCAGTGCCTATCGGCAT
GCTGGGAGGAGACTACTACAGGAAGCTCCTGCGCTACTACAGCAAGAACCGCCCAACCGAGGCTGTCAGG
TGCTACGAGCTGCTGGCCCTGCACCTGTCTGTCATCCCCACTGACCTGCTGGTGCAGCAGGCCGGCCAGC
TGGCCCGGCGCCTCTGGGAGGCCTCCCGTATCCCCCTGCTCTAG

Translation (667 aa):
MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMTMLEKLSDTYT
CFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHFGLVTVDGHLIRKELRPPDLA
QRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLCELCIEALERHVIQAVNTSPERGGEEALHAF
LLVHSKLLAFYSSHSASSLRPADLLALILLVQDLYPSESTAEDDIQETDSFSLPEEYFTPAPSPGDQSSG
STIWLEGGTPPMDALQIAEDTLQTLVPHCPVPSGPRRIFLDANVKESYCPLVPHTMYCLPLWQGINLVLL
TRSPSAPLALVLSQLMDGFSMLEKKLKEGPEPGASLRSQPLVGDLRQRMDKFVKNRGAQEIQSTWLEFKA
KAFSKSEPGSSWELLQACGKLKRQLCAIYRLNFLTTAPSRGGPHLPQHLQDQVQRLMREKLTDWKDFLLV
KSRRNITMVSYLEDFPGLVHFIYVDRTTGQMVAPSLNCSQKTSSELGKGPLAAFVKTKVWSLIQLARRYL
QKGYTTLLFQEGDFYCSYFLWFENDMGYKLQMIEVPVLSDDSVPIGMLGGDYYRKLLRYYSKNRPTEAVR
CYELLALHLSVIPTDLLVQQAGQLARRLWEASRIPLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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