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Report for CCDS91380.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91380.1 Public Homo sapiens 10 JAKMIP3 24 110 108 CCDS HistoryNCBI Gene:282973Re-query CCDS DB by CCDS ID:91380.1Re-query CCDS DB by GeneID:282973See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 91380.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000653512.1 ENSP00000499285.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000653512.1Link to Ensembl Protein Viewer:ENSP00000499285.1Re-query CCDS DB by Nucleotide ID:ENST00000653512Re-query CCDS DB by Protein ID:ENSP00000499285
Original member Current member NCBI NM_001392052.1 NP_001378981.1 Accepted alive Link to Nucleotide Sequence:NM_001392052.1Link to Protein Sequence:NP_001378981.1Re-query CCDS DB by Nucleotide ID:NM_001392052Re-query CCDS DB by Protein ID:NP_001378981Link to BLAST:NP_001378981.1

Chromosomal Locations for CCDS 91380.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 132104809 132104943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132117077 132117574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132133312 132133527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132135047 132135160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132135930 132136076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132137019 132137150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132137254 132137289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132138119 132138178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132140451 132140579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132141920 132142048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132145107 132145190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132145518 132145580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132147952 132148050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132149412 132149510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132149982 132150041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132152958 132153023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132153759 132153827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132153913 132153990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132163251 132163412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132164670 132164735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132166983 132167033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2493 nt):
ATGTCCAAGAGGGGCATGAGCAGCCGGGCCAAGGGGGACAAGGCAGAGGCCCTCGCGGCGCTGCAGGCGG
CCAACGAGGATCTTCGAGCCAAGCTCACAGACATCCAGATCGAGCTGCAGCAGGAGAAGAGCAAGGTCAG
CAAAGTGGAACGCGAGAAGAACCAGGAGCTGCGGCAGGTGCGCGAGCATGAGCAGCATAAGACCGCGGTC
TTGCTCACGGAGCTCAAGACAAAGCTGCACGAGGAGAAGATGAAGGAGCTACAGGCTGTGCGTGAGACGC
TGCTGCGGCAGCATGAGGCTGAGCTGCTCAGGGTCATCAAGATCAAGGACAACGAGAACCAGCGGCTGCA
GGCACTGCTCAGTGCCCTGCGTGATGGCGGCCCCGAAAAGGTCAAGACCGTGCTGCTGTCCGAGGCCAAG
GAGGAGGCCAAGAAGGGGTTCGAGGTGGAGAAGGTCAAGATGCAGCAGGAGATCTCCGAGCTCAAGGGCG
CCAAAAGGCAGGTGGAGGAGGCGCTGACGCTGGTGATCCAAGCGGACAAGATCAAGGCCGCAGAGATCCG
CAGCGTGTACCACCTGCACCAGGAGGAGATCACCCGCATCAAGAAGGAGTGCGAGCGGGAGATCCGCAGG
CTGATGGAGGAGATAAAATTTAAAGACAGAGCAGTCTTCGTGCTGGAGAGAGAGTTAGGGGTTCAAGCCG
GGCATGCTCAGAGACTGCAGCTCCAAAAAGAGGCTCTAGATGAGCAGCTGTCCCAGGTCCGAGAGGCCGA
CCGGCACCCGGGCAGCCCCAGACGGGAACTTCCTCATGCAGCTGGTGCAGGAGACGCTTCAGACCACTCG
GGAAGCCCTCAGTTGGATGAAAAAGATGCCCGGCGCTTCCAGCTTAAAATCGCGGAGTTAAGTGCGATTA
TCCGCAAACTGGAGGACCGCAATGCATTGCTGTCGGAAGAGAGGAATGAGCTGTTGAAGCGCGTAAGAGA
AGCTGAGAGTCAGTACAAGCCTCTGCTGGATAAAAACAAGCGCCTCAGTCGGAAGAACGAGGATTTGTCT
CATGCTTTACGCCGAATGGAAAACAAGTTAAAATTTGTCACCCAGGAGAACATAGAAATGAGACAGAGAG
CTGGAATCATACGGAGACCCAGTTCCTTGAATGACCTTGATCAAAGTCAGGATGAGAGAGAAGTCGATTT
CTTGAAGCTTCAGATTGTGGAGCAGCAAAACCTCATAGATGAACTGTCTAAGACCCTTGAGACCGCCGGC
TACGTGAAGAGCGTGTTAGAGCGGGACAAGCTGTTAAGATTCCGGAAGCAAAGAAAGAAAATGGCAAAAC
TTCCCAAGCCGGTGGTTGTGGAGACCTTCTTTGGATACGACGAAGAGGCTTCCCTGGAATCCGACGGCTC
CTCCGTCTCTTACCAAACAGACAGGACGGACCAGACCCCGTGCACCCCGGACGATGACTTGGAGGAGGGC
ATGGCCAAGGAGGAGACGGAGCTGAGGTTCCGGCAGCTGACCATGGAGTACCAGGCCCTGCAGCGTGCCT
ACGCTTTGTTGCAGGAGCAGGTTGGAGGGACGCTGGACGCAGAGCGAGAAGTTAAGACCCGTGAGCAGCT
ACAAGCCGAAGTGCAGAGGGCACAGGCGCGGATAGAGGACCTGGAGAAGGCCCTGGCGGAGCAGGGGCAG
GATATGAAGTGGATTGAAGAGAAGCAGGCACTGTACCGGAGAAATCAAGAGCTTGTGGAAAAGATCAAAC
AAATGGAGACGGAAGAGGCTCGGCTCAGACACGAGGTGCAGGACGCCAGAGACCAAAACGAGCTGCTGGA
GTTCAGGATCCTGGAGCTTGAGGAGAGGGAGAGGAAGTCACCCGCCATCAGCTTCCACCACACGCCCTTC
GTGGACGGGAAGAGCCCCCTCCAGGTGTACTGCGAGGCCGAAGGTGTGACGGACATTGTGGTTGCGGAGC
TGATGAAGAAGCTGGACATCCTGGGCGATAACGCCGTAAGTAACCTGACCAATGAGGAGCAGGTGGTTGT
CATACAAGCCAGGACAGTCCTGACCTTGGCCGAAAAGTGGCTCCAGCAGATTGAGGAGACAGAGGCGGCG
CTGCAGCGGAAGATGGTGGATCTGGAGAGCGAGAAGGAGCTGTTCAGTAAGCAGAAGGGCTACCTGGACG
AGGAGCTGGACTACCGGAAACAGGCCTTGGACCAGGCCAACAAGCAGGAGGCCGGGGCTAAGGTGGCTGA
GCTGCTGTCAGAGGAGGAGCGCGAGAAGCTCAAGGTGGCCGTGGAGCAGTGGAAGCGCCAGGTCATGAGT
GAGCTGCGCGAGCGGGACGCCCAGATCCTGCGGGAGCGCATGGAGCTGCTGCAGCTGGCTCAGCAGAGAA
TTAAAGAGTTAGAAGAAAGAATAGAAGCTCAGAAGAGACAAATAAAGGAACTGGAGGAAAAGTTTCTATT
TTTGTTCTTATTTTTCTCCTTAGCTTTCATTCTCTGGTCATAG

Translation (830 aa):
MSKRGMSSRAKGDKAEALAALQAANEDLRAKLTDIQIELQQEKSKVSKVEREKNQELRQVREHEQHKTAV
LLTELKTKLHEEKMKELQAVRETLLRQHEAELLRVIKIKDNENQRLQALLSALRDGGPEKVKTVLLSEAK
EEAKKGFEVEKVKMQQEISELKGAKRQVEEALTLVIQADKIKAAEIRSVYHLHQEEITRIKKECEREIRR
LMEEIKFKDRAVFVLERELGVQAGHAQRLQLQKEALDEQLSQVREADRHPGSPRRELPHAAGAGDASDHS
GSPQLDEKDARRFQLKIAELSAIIRKLEDRNALLSEERNELLKRVREAESQYKPLLDKNKRLSRKNEDLS
HALRRMENKLKFVTQENIEMRQRAGIIRRPSSLNDLDQSQDEREVDFLKLQIVEQQNLIDELSKTLETAG
YVKSVLERDKLLRFRKQRKKMAKLPKPVVVETFFGYDEEASLESDGSSVSYQTDRTDQTPCTPDDDLEEG
MAKEETELRFRQLTMEYQALQRAYALLQEQVGGTLDAEREVKTREQLQAEVQRAQARIEDLEKALAEQGQ
DMKWIEEKQALYRRNQELVEKIKQMETEEARLRHEVQDARDQNELLEFRILELEERERKSPAISFHHTPF
VDGKSPLQVYCEAEGVTDIVVAELMKKLDILGDNAVSNLTNEEQVVVIQARTVLTLAEKWLQQIEETEAA
LQRKMVDLESEKELFSKQKGYLDEELDYRKQALDQANKQEAGAKVAELLSEEEREKLKVAVEQWKRQVMS
ELRERDAQILRERMELLQLAQQRIKELEERIEAQKRQIKELEEKFLFLFLFFSLAFILWS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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