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Report for CCDS9180.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
9180.2 |
Public |
Homo sapiens |
12 |
RNFT2 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:84900](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:9180.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:84900](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 12 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 9180.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000407967.7 |
ENSP00000385669.3 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000407967.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000385669.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000407967](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000385669](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_032814.4 |
NP_116203.2 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_032814.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_116203.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_032814](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_116203](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_116203.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_116203.2 |
420 |
Q96EX2-5 |
420 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 9180.2
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1263 nt): ATGTGGCTCTTCACAGTGAATCAGGTGTTAAGGAAGATGCAGAGACGCCACAGCAGCAACACGGATAACA TTCCACCTGAAAGAAACCGCAGCCAGGCGCTCAGCTCCGAGGCGAGTGTGGATGAAGGTGGCGTCTTTGA GAGTCTGAAGGCAGAGGCAGCCTCCCCACCAGCGCTCTTCTCGGGCTTATCAGGCAGCCTCCCCACCAGC TCGTTCCCCTCCAGCCTGGTGCTGGGCTCCTCGGCTGGCGGCGGGGACGTGTTCATCCAGATGCCCGCGT CCAGGGAGGAAGGAGGGGGCCGGGGCGAGGGGGGCGCCTACCACCACCGCCAGCCCCACCACCATTTCCA CCATGGCGGCCACCGCGGGGGCTCCCTGCTGCAGCACGTGGGTGGGGACCACCGGGGGCACTCGGAGGAG GGAGGCGACGAGCAGCCTGGGACGCCCGCCCCCGCCCTGTCCGAGCTGAAGGCTGTGATCTGCTGGCTCC AGAAAGGACTCCCCTTCATCCTGATCCTCCTGGCCAAACTGTGCTTTCAGCATAAGCTCGGCATTGCTGT GTGCATCGGGATGGCCAGCACCTTCGCCTATGCCAACTCCACGCTTCGAGAACAGGTCTCACTGAAGGAG AAGAGGTCAGTGCTGGTCATCTTGTGGATCCTGGCCTTTCTGGCGGGGAACACCCTCTATGTGCTTTATA CATTCAGCTCCCAGCAGCTGTACAACAGCCTCATATTCCTGAAGCCCAACCTGGAGATGCTGGACTTCTT TGACCTGCTATGGATTGTGGGGATCGCAGACTTTGTTCTGAAGTACATCACCATCGCCCTCAAGTGCCTC ATCGTGGCCCTGCCCAAGATCATCCTGGCTGTCAAGTCCAAGGGAAAGTTCTATCTGGTCATCGAGGAGC TGAGCCAGCTGTTCCGATCCCTTGTCCCCATCCAGCTGTGGTACAAATACATCATGGGTGACGACTCCTC CAACAGCTACTTCCTGGGCGGGGTCCTGATCGTTCTCTACAGCCTCTGCAAGTCCTTCGACATCTGTGGA CGTGTGGGCGGAGTTAGGAAAGCCCTGAAGCTTCTCTGTACCTCTCAGAACTATGGAGTCCGAGCCACCG GGCAGCAGTGCACAGAAGCTGGTGACATCTGCGCCATCTGTCAGGCCGAGTTCCGAGAGCCTCTGATTCT CCTGTGCCAGATGCTGTTGAAGGGGCACAAGAAATTGGAGCTGGAGAAGATTGATGAAAGTGCAGGTGTG TAA
Translation (420 aa): MWLFTVNQVLRKMQRRHSSNTDNIPPERNRSQALSSEASVDEGGVFESLKAEAASPPALFSGLSGSLPTS SFPSSLVLGSSAGGGDVFIQMPASREEGGGRGEGGAYHHRQPHHHFHHGGHRGGSLLQHVGGDHRGHSEE GGDEQPGTPAPALSELKAVICWLQKGLPFILILLAKLCFQHKLGIAVCIGMASTFAYANSTLREQVSLKE KRSVLVILWILAFLAGNTLYVLYTFSSQQLYNSLIFLKPNLEMLDFFDLLWIVGIADFVLKYITIALKCL IVALPKIILAVKSKGKFYLVIEELSQLFRSLVPIQLWYKYIMGDDSSNSYFLGGVLIVLYSLCKSFDICG RVGGVRKALKLLCTSQNYGVRATGQQCTEAGDICAICQAEFREPLILLCQMLLKGHKKLELEKIDESAGV
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