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Report for CCDS91834.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91834.1 Public Homo sapiens 13 DAOA 24 110 108 CCDS HistoryNCBI Gene:267012Re-query CCDS DB by CCDS ID:91834.1Re-query CCDS DB by GeneID:267012See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 91834.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000473269.5 ENSP00000470244.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000473269.5Link to Ensembl Protein Viewer:ENSP00000470244.1Re-query CCDS DB by Nucleotide ID:ENST00000473269Re-query CCDS DB by Protein ID:ENSP00000470244
Original member Current member NCBI NM_001384644.1 NP_001371573.1 Accepted alive Link to Nucleotide Sequence:NM_001384644.1Link to Protein Sequence:NP_001371573.1Re-query CCDS DB by Nucleotide ID:NM_001384644Re-query CCDS DB by Protein ID:NP_001371573Link to BLAST:NP_001371573.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001371573.1 126 P59103-4 126 100% 0 0

Chromosomal Locations for CCDS 91834.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 105466289 105466332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 105467053 105467141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 105472538 105472685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 105474977 105475070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 105489901 105489906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (381 nt):
ATGCTGGAAAAGCTGATGGGTGCTGATTCTCTCCAGCTTTTCAGATCCAGATATACATTGGGTAAAATCT
ACTTCATAGGTTTTCAAAGGAGCATTCTTCTGAGCAAATCTGAAAACTCTCTAAACTCTATTGCAAAGGA
GACAGAAGAAGGAAGAGAGACGGTAACAAGGAAAGAAGGATGGAAGAGAAGGCATGAGGACGGCTATTTG
GAAATGGCACAGAGGCATTTACAGAGATCATTATGTCCTTGGGTCTCTTACCTTCCTCAGCCCTATGCAG
AACATTCCAAGGTGATTCTAAATGGCAATTTGCACTGTCATTTTAAAAGAATTTCTCAGATATTTGCTGG
GCACTTTATGGAAGGAGACACTGAGGCTTGA

Translation (126 aa):
MLEKLMGADSLQLFRSRYTLGKIYFIGFQRSILLSKSENSLNSIAKETEEGRETVTRKEGWKRRHEDGYL
EMAQRHLQRSLCPWVSYLPQPYAEHSKVILNGNLHCHFKRISQIFAGHFMEGDTEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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