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Report for CCDS91858.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91858.1 Public Homo sapiens 14 SCFD1 24 110 108 CCDS HistoryNCBI Gene:23256Re-query CCDS DB by CCDS ID:91858.1Re-query CCDS DB by GeneID:23256See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 91858.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000676674.1 ENSP00000502860.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676674.1Link to Ensembl Protein Viewer:ENSP00000502860.1Re-query CCDS DB by Nucleotide ID:ENST00000676674Re-query CCDS DB by Protein ID:ENSP00000502860
Original member Current member NCBI NM_001283031.1 NP_001269960.1 Accepted alive Link to Nucleotide Sequence:NM_001283031.1Link to Protein Sequence:NP_001269960.1Re-query CCDS DB by Nucleotide ID:NM_001283031Re-query CCDS DB by Protein ID:NP_001269960Link to BLAST:NP_001269960.1
Original member Current member NCBI NM_001283033.1 NP_001269962.1 Accepted alive Link to Nucleotide Sequence:NM_001283033.1Link to Protein Sequence:NP_001269962.1Re-query CCDS DB by Nucleotide ID:NM_001283033Re-query CCDS DB by Protein ID:NP_001269962Link to BLAST:NP_001269962.1

Chromosomal Locations for CCDS 91858.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 30643348 30643405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30649528 30649583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30650565 30650650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30653489 30653588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30670256 30670395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30673257 30673347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30673924 30673997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30674984 30675065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30694773 30694869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30700188 30700258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30702296 30702375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30705823 30705885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30707990 30708065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30715924 30715977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30719325 30719377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30721884 30721917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30722494 30722559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30734790 30734858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30735586 30735609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1374 nt):
ATGGAAACTGTTATGGACACTATAGTTGACAGCCTCTTCTGCTTTTTTGTTACTCTGGGTGCTGTTCCTA
TAATCAGATGTTCAAGAGGAACAGCAGCAGAAATGGTAGCAGTGAAACTAGACAAGAAACTTCGAGAAAA
TCTAAGAGATGCAAGAAACAGTCTTTTTACAGGTGATACACTTGGAGCTGGCCAATTCAGCTTCCAGAGG
CCCTTATTAGTCCTTGTTGACAGAAACATAGATTTGGCAACTCCTTTACATCATACTTGGACATATCAAG
CATTGGTGCACGATGTACTGGATTTCCATTTAAACAGGGTTAATTTGGAAGAATCTTCAGGAGTGGAAAA
CTCTCCAGCTGGTGCTAGACCAAAGAGAAAAAACAAGAAGTCTTATGATTTAACTCCGGTTGATAAATTT
TGGCAAAAACATAAAGGAAGTCCATTCCCAGAAGTTGCAGAATCAGTTCAGCAAGAACTAGAATCTTACA
GAGCACAGGAAGATGAGGTCAAACGACTTAAAAGCATTATGGGACTAGAAGGGGAAGATGAAGGAGCCAT
AAGTATGCTTTCTGACAATACCGCTAAGCTAACATCAGCTGTTAGTTCTTTGCCAGAACTCCTTGAGAAA
AAAAGACTTATTGATCTCCATACAAATGTTGCCACTGCTGTTTTAGAACATATAAAGGCAAGAAAATTGG
ATGTATATTTTGAATATGAAGAAAAAATAATGAGCAAAACTACTCTGGATAAATCTCTTCTAGATATAAT
ATCAGACCCTGATGCAGGAACTCCAGAAGATAAAATGAGGTTGTTTCTTATCTATTATATAAGCACACAG
CAAGCACCTTCTGAGGCTGATTTGGAGCAATATAAAAAAGCTTTAACTGATGCAGGATGCAACCTTAATC
CTTTACAATATATCAAACAGTGGAAGGCTTTTACCAAGATGGCCTCAGCTCCGGCCAGCTATGGCAGCAC
TACCACTAAACCAATGGGTCTTTTATCACGAGTCATGAATACAGGATCACAGTTTGTGATGGAAGGAGTG
AAGAACCTGGTTTTGAAACAGCAAAATCTACCTGTTACTCGTATTTTGGACAATCTTATGGAGATGAAGT
CAAACCCCGAAACTGATGACTATAGATATTTTGATCCCAAAATGCTGCGGGGCAATGACAGCTCAGTTCC
CAGAAATAAAAATCCATTCCAAGAGGCCATTGTTTTTGTGGTGGGAGGAGGCAACTACATTGAATATCAG
AATCTTGTTGACTACATAAAGGGGAAACAAGGCAAACACATTTTATATGGCTGCAGTGAGCTTTTTAATG
CTACACAGTTCATAAAACAGTTGTCACAACTTGGACAAAAGTAA

Translation (457 aa):
METVMDTIVDSLFCFFVTLGAVPIIRCSRGTAAEMVAVKLDKKLRENLRDARNSLFTGDTLGAGQFSFQR
PLLVLVDRNIDLATPLHHTWTYQALVHDVLDFHLNRVNLEESSGVENSPAGARPKRKNKKSYDLTPVDKF
WQKHKGSPFPEVAESVQQELESYRAQEDEVKRLKSIMGLEGEDEGAISMLSDNTAKLTSAVSSLPELLEK
KRLIDLHTNVATAVLEHIKARKLDVYFEYEEKIMSKTTLDKSLLDIISDPDAGTPEDKMRLFLIYYISTQ
QAPSEADLEQYKKALTDAGCNLNPLQYIKQWKAFTKMASAPASYGSTTTKPMGLLSRVMNTGSQFVMEGV
KNLVLKQQNLPVTRILDNLMEMKSNPETDDYRYFDPKMLRGNDSSVPRNKNPFQEAIVFVVGGGNYIEYQ
NLVDYIKGKQGKHILYGCSELFNATQFIKQLSQLGQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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