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Report for CCDS92076.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92076.1 Public Homo sapiens 16 CCDC78 24 110 108 CCDS HistoryNCBI Gene:124093Re-query CCDS DB by CCDS ID:92076.1Re-query CCDS DB by GeneID:124093See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92076.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000345165.10 ENSP00000316851.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000345165.10Link to Ensembl Protein Viewer:ENSP00000316851.5Re-query CCDS DB by Nucleotide ID:ENST00000345165Re-query CCDS DB by Protein ID:ENSP00000316851
Original member Current member NCBI NM_001378030.1 NP_001364959.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001378030.1Link to Protein Sequence:NP_001364959.1Re-query CCDS DB by Nucleotide ID:NM_001378030Re-query CCDS DB by Protein ID:NP_001364959Link to BLAST:NP_001364959.1

Chromosomal Locations for CCDS 92076.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 722678 722789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 722922 723022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 723095 723161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 723857 723936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 724106 724205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 724322 724509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 724681 724806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 724911 724989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 725078 725145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 725237 725293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 725413 725580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 725794 725880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 725966 726085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 726308 726367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGGAGCACGCAGCCACCACAGGCCCCAGGCCTGGACCTCCCTCTCGGCGGGTGGAGAATGTTGTGCTAC
GAGCCAAGGACTGGCTGCCAGGAGCTCCTGGGGGCACCGCAGTGTGGGCCACCAGCTTGGAAGCAGAGGT
CCCACCAGATCTAGCGCTCAATAAGGAGCAGCAGCTGCAGATCTCCAAGGAGCTGGTCGACATTCAGATC
ACAACCCACCACCTACATGAGCAGCATGAGGCTGAAATCTTCCAGCTGAAGAGTGAGATCCTTCGGCTGG
AGAGCCGGGTACTGGAGCTGGAGCTGCGAGGAGATGGCACCAGCCAGGGCTGTGCAGTCCCAGTGGAGTC
TGACCCCAGGCATCCCCGGGCAGCAGCCCAAGAGCTCAGACACAAAGCCCAGGTGCCTGGACACTCTGAT
GACCACAGATTCCAGGTGCAGCCCAAGAACACCATGAACCCCGAGAATGAGCAGCACAGGCTGGGGAGCG
GCCTGCAGGGGGAAGTGAAGTGGGCGCTGGAGCATCAGGAGGCCCGGCAGCAGGCACTGGTGACGCGTGT
GGCAACCCTGGGCCGGCAGCTGCAGGGAGCCCGAGAGGAGGCCAGGGCAGCCGGGCAGCGACTGGCCACA
CAGGCTGTGGTGCTGTGCAGCTGCCAAGGCCAGCTCCGTCAGGCAGAGGCTGAAAATGCCCGGCTGCAGC
TGCAGCTCAAGAAACTGAAGGATGAGTACGTCCTACGGCTGCAACACTGCGCCTGGCAGGCAGTGGAGCA
CGCAGATGGTGCAGGCCAAGCGCCAGCCACCACGGCCCTCCGGACATTCCTGGAGGCGACTCTGGAGGAC
ATCCGGGCAGCGCACCGCAGCCGTGAGCAGCAGCTGGCCCGGGCTGCCCGCAGCTACCACAAGAGGCTGG
TGGATCTGAGCCGCAGGCATGAAGAGCTACTGGTTGCCTACAGGGCACCTGGGAACCCCCAAGCTATTTT
TGACATAGCCAGCTTGGACCTGGAACCATTGCCCGTGCCCCTGGTCACTGACTTCAGCCATCGGGAGGAC
CAGCACGGCGGGCCTGGGGCACTGCTCTCATCCCCAAAAAAGAGACCCGGTGGAGCCTCCCAGGGGGGAA
CATCAGAGCCACAGGGCCTGGACGCTGCATCCTGGGCCCAGATCCACCAGAAGCTCCGGGACTTCTCCCG
CAGCACCCAGGCAGAGCTGGAACGGGAGCGGGCACAGCTGCTGGTCCGGGCCACGATGGCTGAAGAGCAA
CTTTCTGAGCTACAGGAGTACGTGGACCAGCACCTGGGCAGGTACAAGCACGAAATCCTGAGGCTGAGGA
AGCTGGCAGGTGCAGGGGACCCCTGGAAAGTGGGGGCTGTGCCTCCAGCCAAGCCCCAGCATCCAAGGAC
CGGCAGCCACTAG

Translation (470 aa):
MEHAATTGPRPGPPSRRVENVVLRAKDWLPGAPGGTAVWATSLEAEVPPDLALNKEQQLQISKELVDIQI
TTHHLHEQHEAEIFQLKSEILRLESRVLELELRGDGTSQGCAVPVESDPRHPRAAAQELRHKAQVPGHSD
DHRFQVQPKNTMNPENEQHRLGSGLQGEVKWALEHQEARQQALVTRVATLGRQLQGAREEARAAGQRLAT
QAVVLCSCQGQLRQAEAENARLQLQLKKLKDEYVLRLQHCAWQAVEHADGAGQAPATTALRTFLEATLED
IRAAHRSREQQLARAARSYHKRLVDLSRRHEELLVAYRAPGNPQAIFDIASLDLEPLPVPLVTDFSHRED
QHGGPGALLSSPKKRPGGASQGGTSEPQGLDAASWAQIHQKLRDFSRSTQAELERERAQLLVRATMAEEQ
LSELQEYVDQHLGRYKHEILRLRKLAGAGDPWKVGAVPPAKPQHPRTGSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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