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Report for CCDS92274.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92274.1 Public Homo sapiens 17 SPECC1 24 110 108 CCDS HistoryNCBI Gene:92521Re-query CCDS DB by CCDS ID:92274.1Re-query CCDS DB by GeneID:92521See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92274.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000583528.6 ENSP00000461918.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000583528.6Link to Ensembl Protein Viewer:ENSP00000461918.2Re-query CCDS DB by Nucleotide ID:ENST00000583528Re-query CCDS DB by Protein ID:ENSP00000461918
Original member Current member NCBI NM_001386078.2 NP_001373007.1 Accepted alive Link to Nucleotide Sequence:NM_001386078.2Link to Protein Sequence:NP_001373007.1Re-query CCDS DB by Nucleotide ID:NM_001386078Re-query CCDS DB by Protein ID:NP_001373007Link to BLAST:NP_001373007.1

Chromosomal Locations for CCDS 92274.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 20096652 20096798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20110427 20110562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20124900 20124997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20227413 20227620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20231758 20231831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20232200 20232405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20245926 20246071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20247219 20247319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20253505 20253586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20257451 20257607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20260192 20260294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20296961 20297077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20306023 20306082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20313976 20314065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1725 nt):
ATGCGGAGTGCAGCCAAGCCCTGGAACCCAGCCATCAGAGCAGGGGGCCACGGCCCAGACCGGGTGCGGC
CTCTGCCTGCAGCCTCTTCCGGCATGAAGAGTTCTAAGTCTTCAACTTCCTTGGCTTTTGAGTCCCGACT
CAGCAGGCTCAAGAGGGCCAGCAGTGAGGACACGCTCAACAAGCCAGGAAGTACCGCTGCATCGGGGGTG
GTTCGCCTGAAGAAGACCGCCACTGCCGGAGCCATCTCGGAGCTCACGGAGAGCCGCCTGAGGAGCGGCA
CAGGCCAGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGG
TCAGGAGATGGAGACCATCCTGACTAACACGGTGGAAAAGGATTATTCATACCTGAAGGAGATATGTGAT
CACCAAGCCGAACAGCTGAGCAGAACCAGCCTAAAGCTGCAAGAAAAAGCATCAGAGAGTGATGCAGAGA
TCAAAGACATGAAAGAAACCATATTTGAATTGGAAGATCAGGTGGAACAGCACCGGGCTGTCAAGTTACA
CAATAATCAACTCATCAGTGAGCTAGAAAGTAGTGTGATCAAGCTGGAGGAACAGAAGTCAGACCTGGAG
AGGCAGCTGAAGACTCTGACCAAGCAGATGAAGGAGGAGACCGAGGAATGGAGGCGGTTCCAGGCGGATC
TGCAGACCGCAGTGGTGGTGGCCAATGACATCAAGTGTGAGGCCCAGCAGGAGCTGCGCACCGTGAAGAG
GAAACTGCTGGAGGAGGAGGAGAAGAATGCCCGGTTGCAGAAGGAGCTGGGGGATGTGCAGGGCCACGGC
AGGGTGGTCACCAGCAGAGCCGCCCCTCCACCTGTGGATGAAGAGCCAGAGTCCTCTGAGGTCGATGCTG
CTGGTCGGTGGCCTGGTGTCTGTGTTAGCAGAACATCTCCAACACCCCCAGAGTCGGCAACCACCGTTAA
GTCACTTATCAAGTCATTTGACTTGGGACGCCCAGGTGGAGCTGGACAGAATATTTCTGTCCATAAGACC
CCCAGAAGTCCCCTAAGTGGGATACCAGTGAGGACTGCTCCAGCAGCTGCTGTCTCTCCAATGCAGAGGC
ATTCGACTTACAGCAGTGTGCGGCCAGCCAGCAGAGGGGTGACTCAACGCTTGGACCTTCCTGACCTTCC
CCTCTCAGATATTCTAAAGGGAAGGACTGAGACCCTGAAGCCAGACCCCCACCTCCGCAAGAGTCCCTCA
CTAGAGTCACTGAGCAGACCCCCGTCTCTGGGCTTTGGGGACACAAGACTGCTGAGTGCTTCCACCCGGG
CATGGAAACCACAAAGCAAACTCAGTGTGGAAAGAAAAGACCCTCTGGCAGCCTTGGCCCGGGAATACGG
TGGTTCCAAGCGCAATGCTCTACTGAAATGGTGCCAGAAGAAGACACAAGGTTATGCGAACATTGACATC
ACCAATTTCAGCAGCAGCTGGAGCGATGGCCTGGCCTTCTGTGCTCTGCTCCACACCTACCTGCCTGCCC
ACATCCCCTACCAGGAGCTGAATAGTCAGGAGAAAAAGAGGAATCTCTTGTTGGCATTTGAAGCGGCTGA
AAGTGTAGGCATCAAACCCAGCCTGGAACTCAGCGAGATGCTGTACACAGACCGGCCCGACTGGCAGAGT
GTGATGCAGTACGTGGCCCAAATCTACAAGTACTTTGAGACGTAA

Translation (574 aa):
MRSAAKPWNPAIRAGGHGPDRVRPLPAASSGMKSSKSSTSLAFESRLSRLKRASSEDTLNKPGSTAASGV
VRLKKTATAGAISELTESRLRSGTGQARWLMPVIPALWEAEVGGSRGQEMETILTNTVEKDYSYLKEICD
HQAEQLSRTSLKLQEKASESDAEIKDMKETIFELEDQVEQHRAVKLHNNQLISELESSVIKLEEQKSDLE
RQLKTLTKQMKEETEEWRRFQADLQTAVVVANDIKCEAQQELRTVKRKLLEEEEKNARLQKELGDVQGHG
RVVTSRAAPPPVDEEPESSEVDAAGRWPGVCVSRTSPTPPESATTVKSLIKSFDLGRPGGAGQNISVHKT
PRSPLSGIPVRTAPAAAVSPMQRHSTYSSVRPASRGVTQRLDLPDLPLSDILKGRTETLKPDPHLRKSPS
LESLSRPPSLGFGDTRLLSASTRAWKPQSKLSVERKDPLAALAREYGGSKRNALLKWCQKKTQGYANIDI
TNFSSSWSDGLAFCALLHTYLPAHIPYQELNSQEKKRNLLLAFEAAESVGIKPSLELSEMLYTDRPDWQS
VMQYVAQIYKYFET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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