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Report for CCDS92360.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92360.1 Public Homo sapiens 17 STXBP4 24 110 108 CCDS HistoryNCBI Gene:252983Re-query CCDS DB by CCDS ID:92360.1Re-query CCDS DB by GeneID:252983See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92360.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000405898.5 ENSP00000385944.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405898.5Link to Ensembl Protein Viewer:ENSP00000385944.1Re-query CCDS DB by Nucleotide ID:ENST00000405898Re-query CCDS DB by Protein ID:ENSP00000385944
Original member Current member NCBI NM_001398482.1 NP_001385411.1 Accepted alive Link to Nucleotide Sequence:NM_001398482.1Link to Protein Sequence:NP_001385411.1Re-query CCDS DB by Nucleotide ID:NM_001398482Re-query CCDS DB by Protein ID:NP_001385411Link to BLAST:NP_001385411.1

Chromosomal Locations for CCDS 92360.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 54986220 54986266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54990825 54990957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54999345 54999451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54999632 54999842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55000808 55000883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55007506 55007597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55031168 55031264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55034168 55034259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55043236 55043325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55043612 55043629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGAATAAAAATACATCTACTGTAGTATCACCCAGTCTACTTGAAAAGGATCCTGCCTTTCAGATGATTA
CAATTGCCAAGGAAACAGGCCTTGGCCTGAAGGTACTAGGAGGAATTAACCGGAATGAAGGCCCATTGGT
ATATATTCAGGAAATTATTCCTGGAGGAGACTGTTATAAGGATGGTCGTTTGAAGCCAGGAGATCAACTT
GTCTCAGTCAACAAGGAATCTATGATTGGTGTATCATTTGAAGAAGCAAAAAGCATAATTACCGGAGCCA
AGTTGAGGTTAGAATCTGCTTGGGAGATAGCATTCATAAGACAAAAATCCGACAACATTCAGCCAGAAAA
TCTGTCATGTACATCACTTATAGAAGCTTCAGGAGAATATGGACCTCAAGCCTCAACATTAAGTCTTTTT
TCTTCTCCTCCTGAAATACTAATCCCAAAGACCTCATCCACTCCCAAAACAAATAATGACATTTTATCTT
CTTGTGAGATAAAAACTGGATACAACAAAACAGTACAGATTCCAATTACTTCAGAAAACAGTACTGTGGG
TTTGTCTAATACAGATGTTGCTTCTGCCTGGACTGAAAATTATGGGCTACAAGAAAAGATCTCCCTAAAT
CCCTCTGTTCGCTTTAAGGCAGAGAAACTGGAAATGGCTCTAAATTATCTTGGTATTCAGCCCACAAAGG
AACAACACCAAGCCCTGAGACAGCAAGTACAAGCAGACTCAAAAGGGACAGTGTCTTTTGGAGATTTTGT
CCAGGTTGCCAGAAACTTGTTTTGCTTGCAGTTGGATGAAGTAAATGTTGGTGCACATGAAATTTCCAAT
ATATTAGATTCACAGCTTCTTCCTTGTGATTCTTCAGAAGCAGATGAAATGGAAAGGCTCAAGTGTGAAA
GAGATGATGCCTTGAAAGAAGTAAATACACTTAAGTGGCCAGGGCAGAATTAG

Translation (320 aa):
MNKNTSTVVSPSLLEKDPAFQMITIAKETGLGLKVLGGINRNEGPLVYIQEIIPGGDCYKDGRLKPGDQL
VSVNKESMIGVSFEEAKSIITGAKLRLESAWEIAFIRQKSDNIQPENLSCTSLIEASGEYGPQASTLSLF
SSPPEILIPKTSSTPKTNNDILSSCEIKTGYNKTVQIPITSENSTVGLSNTDVASAWTENYGLQEKISLN
PSVRFKAEKLEMALNYLGIQPTKEQHQALRQQVQADSKGTVSFGDFVQVARNLFCLQLDEVNVGAHEISN
ILDSQLLPCDSSEADEMERLKCERDDALKEVNTLKWPGQN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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