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Report for CCDS92728.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92728.1 Public Homo sapiens 2 CLIP4 24 110 108 CCDS HistoryNCBI Gene:79745Re-query CCDS DB by CCDS ID:92728.1Re-query CCDS DB by GeneID:79745See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92728.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000689070.1 ENSP00000509643.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000689070.1Link to Ensembl Protein Viewer:ENSP00000509643.1Re-query CCDS DB by Nucleotide ID:ENST00000689070Re-query CCDS DB by Protein ID:ENSP00000509643
Current member NCBI NM_001410747.1 NP_001397676.1 Accepted alive Link to Nucleotide Sequence:NM_001410747.1Link to Protein Sequence:NP_001397676.1Re-query CCDS DB by Nucleotide ID:NM_001410747Re-query CCDS DB by Protein ID:NP_001397676Link to BLAST:NP_001397676.1

Chromosomal Locations for CCDS 92728.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 29121389 29121521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29131258 29131397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29132152 29132245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29133655 29133816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29135548 29135666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29143709 29143945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29145232 29145367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29152685 29152828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29156354 29156443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29157204 29157347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29160333 29160467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29163831 29163954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29167476 29167540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29181572 29181639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1791 nt):
ATGACCATAGAGGACCTTCCAGATTTTCCATTAGAAGGAAATCCTTTGTTTGGAAGATACCCATTTATAT
TTTCTGCTTCTGATACCCCAGTTATCTTTTCCATTTCTGCAGCACCAATGCCTTCAGACTGTGAATTTTC
TTTCTTTGATCCTAATGATGCATCATGCCAGGAAATTCTTTTTGATCCCAAAACTTCAGTTTCAGAATTA
TTTGCCATTTTGAGACAGTGGGTTCCTCAGGTCCAACAAAACATTGACATTATTGGAAATGAGATTCTTA
AGAGAGGTTGCAATGTGAATGATAGAGATGGATTGACAGATATGACTCTTTTACATTATACCTGCAAATC
TGGAGCTCATGGTATTGGTGATGTGGAAACAGCTGTAAAATTTGCAACTCAGCTTATTGACCTGGGAGCA
GACATTAGTTTGCGGAGTCGCTGGACAAACATGAATGCTTTGCATTATGCTGCTTATTTTGATGTCCCTG
AACTTATAAGAGTGATTTTGAAAACATCGAAACCAAAAGATGTGGATGCCACTTGCAGTGATTTTAATTT
TGGAACAGCTTTGCATATTGCAGCATACAACTTGTGTGCAGGTGCTGTGAAGTGCCTCTTGGAGCAGGGA
GCAAATCCTGCATTTAGGAATGACAAAGGACAGATCCCTGCTGATGTTGTTCCAGACCCAGTAGATATGC
CGTTAGAGATGGCTGACGCCGCAGCCACTGCTAAGGAAATCAAGCAGATGCTTCTAGATGCGGTGCCTCT
GTCATGTAACATCTCAAAGGCCATGCTCCCAAATTATGATCATGTCACTGGCAAGGCAATGCTTACGTCA
CTTGGCCTGAAGTTGGGGGATCGTGTTGTTATTGCAGGACAGAAGGTTGGTACATTAAGATTTTGTGGAA
CAACTGAATTTGCAAGTGGGCAGTGGGCTGGCATTGAACTGGATGAACCAGAAGGAAAAAATAATGGAAG
TGTTGGAAAAGTCCAGTACTTTAAATGTGCCCCCAAGTATGGTATTTTTGCACCTCTTTCAAAGATAAGT
AAAGCAAAAGGTCGAAGGAAGAATATAACACACACTCCTTCTACAAAAGCTGCTGTACCTCTCATCAGGT
CCCAGAAAATTGACGTAGCTCATGTGACGTCAAAAGTAAATACTGGATTAATGACATCAAAAAAAGATAG
TGCTTCTGAGTCAACACTTTCATTGCCTCCTGGTGAAGAACTTAAAACTGTGACAGAGAAAGATGTTGCC
CTGCTTGGATCTGTCAGCAGCTGCTCCTCTACATCTTCTTTGGAACACAGACAGAGCTACCCCAAGAAAC
AGAATGCAATCAGCAGTAACAAGAAGACAATGAGCAAAAGCCCTTCCCTTTCATCCAGAGCCAGTGCTGG
TTTGAATTCCTCAGCAACATCTACAGCAAATAATAGCCGTTGCGAGGGGGAACTCCGCCTCGGAGAGAGA
GTGTTAGTGGTAGGACAGAGACTGGGCACCATTAGGTTCTTTGGGACAACAAACTTCGCTCCAGGATATT
GGTATGGTATAGAGCTTGAAAAACCCCATGGCAAGAATGATGGTTCAGTTGGAGGTGTGCAGTATTTTAG
CTGTTCTCCAAGATATGGAATATTTGCTCCCCCATCCAGGGTGCAAAGAGTAACAGATTCCCTGGATACC
CTTTCAGAAATTTCTTCAAATAAACAGAACCATTCTTATCCTGATCGAAAGCTGCTTTGCGTCGCAGTTG
GAGCAGCACCCCCACCGCAGGTGGCATTGAAGGGAGCGTGA

Translation (596 aa):
MTIEDLPDFPLEGNPLFGRYPFIFSASDTPVIFSISAAPMPSDCEFSFFDPNDASCQEILFDPKTSVSEL
FAILRQWVPQVQQNIDIIGNEILKRGCNVNDRDGLTDMTLLHYTCKSGAHGIGDVETAVKFATQLIDLGA
DISLRSRWTNMNALHYAAYFDVPELIRVILKTSKPKDVDATCSDFNFGTALHIAAYNLCAGAVKCLLEQG
ANPAFRNDKGQIPADVVPDPVDMPLEMADAAATAKEIKQMLLDAVPLSCNISKAMLPNYDHVTGKAMLTS
LGLKLGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGKVQYFKCAPKYGIFAPLSKIS
KAKGRRKNITHTPSTKAAVPLIRSQKIDVAHVTSKVNTGLMTSKKDSASESTLSLPPGEELKTVTEKDVA
LLGSVSSCSSTSSLEHRQSYPKKQNAISSNKKTMSKSPSLSSRASAGLNSSATSTANNSRCEGELRLGER
VLVVGQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRVQRVTDSLDT
LSEISSNKQNHSYPDRKLLCVAVGAAPPPQVALKGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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