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Report for CCDS9281.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9281.1 Public Homo sapiens 12 GOLGA3 24 110 108 CCDS HistoryNCBI Gene:2802Re-query CCDS DB by CCDS ID:9281.1Re-query CCDS DB by GeneID:2802See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9281.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000204726.9 ENSP00000204726.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000204726.9Link to Ensembl Protein Viewer:ENSP00000204726.3Re-query CCDS DB by Nucleotide ID:ENST00000204726Re-query CCDS DB by Protein ID:ENSP00000204726
Original member Current member EBI ENST00000450791.8 ENSP00000410378.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000450791.8Link to Ensembl Protein Viewer:ENSP00000410378.2Re-query CCDS DB by Nucleotide ID:ENST00000450791Re-query CCDS DB by Protein ID:ENSP00000410378
Original member Current member NCBI NM_001389683.1 NP_001376612.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001389683.1Link to Protein Sequence:NP_001376612.1Re-query CCDS DB by Nucleotide ID:NM_001389683Re-query CCDS DB by Protein ID:NP_001376612Link to BLAST:NP_001376612.1
Original member Current member NCBI NM_001389684.1 NP_001376613.1 Accepted alive Link to Nucleotide Sequence:NM_001389684.1Link to Protein Sequence:NP_001376613.1Re-query CCDS DB by Nucleotide ID:NM_001389684Re-query CCDS DB by Protein ID:NP_001376613Link to BLAST:NP_001376613.1
Original member Current member NCBI NM_001389685.1 NP_001376614.1 Accepted alive Link to Nucleotide Sequence:NM_001389685.1Link to Protein Sequence:NP_001376614.1Re-query CCDS DB by Nucleotide ID:NM_001389685Re-query CCDS DB by Protein ID:NP_001376614Link to BLAST:NP_001376614.1
Original member Current member NCBI NM_005895.4 NP_005886.2 Accepted alive Link to Nucleotide Sequence:NM_005895.4Link to Protein Sequence:NP_005886.2Re-query CCDS DB by Nucleotide ID:NM_005895Re-query CCDS DB by Protein ID:NP_005886Link to BLAST:NP_005886.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001376612.1 1498 Q08378-1 1498 100% 0 0
NP_001376613.1 1498 Q08378-1 1498 100% 0 0
NP_001376614.1 1498 Q08378-1 1498 100% 0 0
NP_005886.2 1498 Q08378-1 1498 100% 0 0

Chromosomal Locations for CCDS 9281.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 132773105 132773294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132774157 132774320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132775141 132775305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132776634 132776756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132776958 132777090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132777666 132777805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132780798 132780914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132782296 132782493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132784164 132784307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132786339 132786555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132786693 132786787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132789027 132789290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132791216 132791293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132795852 132796220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132796539 132796700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132798340 132798477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132801767 132801969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132804716 132805022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132807177 132807288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132807891 132808549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132813307 132813419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132816540 132816812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132821996 132822128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4497 nt):
ATGGACGGCGCGTCGGCCGAGCAAGATGGCCTCCAGGAGGACAGATCCCACAGTGGCCCCTCGTCTCTCC
CCGAGGCCCCACTGAAGCCCCCGGGCCCACTGGTGCCACCTGACCAGCAGGACAAAGTCCAGTGTGCCGA
GGTAAACAGAGCATCCACGGAAGGGGAAAGCCCGGATGGACCTGGCCAGGGAGGCCTCTGTCAGAACGGG
CCAACGCCACCCTTCCCAGACCCTCCGTCGTCTCTCGATCCCACCACAAGCCCAGTGGGCCCTGATGCCT
CTCCAGGTGTGGCTGGTTTCCATGACAACCTAAGGAAGTCTCAGGGAACTAGTGCTGAGGGCAGTGTTAG
AAAAGAAGCTTTGCAGTCTCTCAGACTCAGTCTTCCTATGCAAGAAACGCAACTGTGCTCTACAGATTCT
CCCCTGCCCCTGGAGAAGGAGGAGCAGGTCCGACTTCAGGCTCGGAAGTGGCTGGAAGAGCAGCTCAAAC
AGTACAGGGTGAAGCGCCAGCAGGAGAGGTCCAGTCAACCTGCAACCAAAACGAGACTTTTTAGCACGCT
TGATCCTGAGCTCATGTTAAACCCAGAAAACTTACCAAGGGCCAGTACCCTGGCTATGACAAAAGAATAT
TCCTTCCTGCGCACCAGTGTCCCTCGGGGGCCTAAGGTGGGCAGCCTGGGGCTTCCGGCACATCCTAGGG
AGAAAAAAACTTCCAAATCAAGCAAAATCCGGTCTCTGGCCGATTACAGAACTGAAGATTCAAATGCGGG
GAATTCTGGGGGAAATGTCCCGGCTCCCGATTCTACCAAGGGTTCCCTGAAGCAGAACAGAAGCAGTGCG
GCGTCCGTTGTGTCTGAGATCAGCCTGTCCCCCGACACTGACGACCGTCTGGAGAACACCTCCCTGGCTG
GAGACAGCGTGTCTGAGGTGGATGGAAATGACAGCGACAGCTCATCGTACAGCAGCGCCTCCACCCGAGG
GACCTATGGCATTCTGTCGAAGACAGTGGGCACGCAGGACACCCCCTATATGGTCAACGGCCAGGAGATT
CCTGCGGATACCCTGGGCCAGTTCCCCTCCATTAAGGACGTCCTCCAGGCCGCAGCCGCTGAGCACCAAG
ACCAGGGGCAGGAGGTCAACGGGGAGGTGCGGAGTCGGAGAGACAGCATCTGCAGCAGCGTGTCCTTGGA
GAGCTCTGCAGCAGAAACACAGGAGGAGATGCTGCAGGTGCTCAAAGAGAAAATGCGACTCGAAGGACAG
CTGGAAGCCTTGTCACTGGAGGCGAGTCAGGCACTTAAAGAGAAGGCTGAGCTGCAGGCCCAGCTGGCCG
CCCTCAGCACGAAGCTGCAGGCGCAGGTGGAGTGCAGCCACAGCAGCCAGCAGCGGCAGGATTCGCTGAG
CTCGGAGGTGGACACCCTGAAGCAGTCGTGCTGGGACCTGGAGCGAGCCATGACTGACCTGCAGAACATG
CTGGAGGCAAAAAATGCCAGCCTGGCGTCGTCCAACAACGACTTGCAGGTGGCCGAGGAGCAGTACCAGA
GGCTTATGGCCAAGGTAGAGGACATGCAGAGGAGCATGCTCAGCAAGGACAACACAGTGCACGACCTGCG
ACAGCAGATGACAGCCTTGCAGAGCCAGCTTCAGCAGGTGCAGCTGGAGCGGACGACGCTGACCAGCAAG
CTGAAGGCGTCGCAGGCGGAGATCTCGTCCCTGCAGAGTGTCCGGCAGTGGTACCAGCAGCAGCTCGCCC
TGGCACAGGAGGCCCGCGTCAGGCTGCAGGGTGAGATGGCCCACATCCAGGTTGGACAGATGACCCAGGC
AGGTCTCCTGGAGCACCTGAAACTCGAGAATGTGTCCCTGTCCCAGCAGCTGACGGAAACTCAGCACAGG
TCCATGAAGGAGAAGGGGCGCATCGCGGCACAGCTGCAGGGCATTGAGGCTGACATGTTGGATCAGGAAG
CAGCCTTCATGCAGATTCAGGAGGCAAAGACGATGGTGGAGGAGGACCTTCAGAGGAGGCTGGAAGAGTT
TGAAGGTGAGAGGGAGCGGCTGCAGAGGATGGCGGACTCGGCGGCATCCCTGGAGCAGCAGCTGGAGCAG
GTGAAGTTGACTTTACTCCAGCGAGACCAGCAGCTTGAGGCTTTGCAGCAGGAGCACCTGGACCTGATGA
AACAGCTCACCTTGACTCAGGAGGCTCTGCAGAGCAGGGAGCAGTCCCTCGATGCCCTGCAGACACACTA
CGATGAGCTGCAGGCCAGGCTGGGGGAGCTGCAGGGCGAGGCCGCCTCCAGGGAGGACACGATCTGCCTC
CTGCAGAACGAGAAGATCATCTTGGAGGCGGCTTTGCAGGCGGCCAAGAGTGGCAAGGAGGAGCTTGACA
GAGGAGCAAGACGCTTGGAAGAAGGTACCGAGGAAACGTCGGAAACTTTAGAGAAGTTAAGAGAAGAATT
AGCTATCAAATCCGGCCAGGTGGAACACCTGCAGCAGGAGACTGCTGCTCTGAAAAAGCAAATGCAAAAA
ATAAAGGAACAGTTTCTCCAACAAAAGGTGATGGTGGAGGCCTACCGGCGCGACGCCACCTCCAAAGACC
AGCTCATCAGTGAGCTGAAAGCCACCAGGAAGAGGCTGGACTCGGAGCTGAAGGAGCTGCGGCAGGAGCT
GATGCAAGTGCACGGGGAGAAGCGGACTGCCGAGGCGGAGCTCTCGCGCCTGCACAGAGAGGTGGCCCAG
GTCCGTCAGCACATGGCGGACCTTGAAGGGCATCTCCAGTCGGCGCAGAAGGAGCGAGACGAGATGGAAA
CACACTTGCAGTCGTTGCAGTTCGATAAGGAGCAGATGGTCGCGGTCACAGAGGCCAATGAGGCGCTGAA
GAAACAAATCGAAGAGTTGCAGCAAGAGGCCCGGAAGGCCATCACGGAACAGAAGCAGAAGATGAGGCGG
CTGGGCTCAGACTTGACCAGCGCCCAGAAGGAGATGAAGACCAAACATAAGGCCTACGAGAACGCCGTGG
GCATCCTCAGCCGCCGCCTGCAGGAGGCCCTCGCGGCCAAGGAGGCTGCGGACGCGGAGCTGGGCCAGCT
CCGAGCCCAGGGTGGCAGCAGTGACAGCAGCCTGGCTCTACATGAAAGGATCCAGGCCCTGGAGGCGGAG
CTGCAGGCTGTCAGTCATAGCAAGACGCTGCTGGAAAAGGAACTGCAGGAGGTCATAGCGCTGACCAGCC
AGGAGCTGGAGGAGTCCCGGGAGAAGGTGCTGGAGCTGGAGGACGAGCTTCAAGAATCCAGAGGCTTTAG
GAAGAAGATAAAACGCCTTGAGGAGTCAAACAAGAAGTTGGCTCTTGAATTAGAGCACGAGAAAGGGAAG
CTTACGGGCCTCGGTCAGTCCAACGCAGCTCTGCGGGAACACAACAGCATCCTAGAAACAGCTTTGGCCA
AGAGGGAGGCAGACCTAGTCCAGTTGAACCTTCAGGTGCAGGCAGTTTTGCAGCGCAAAGAAGAGGAGGA
TCGCCAGATGAAGCATCTTGTCCAGGCCCTGCAGGCCTCACTAGAGAAGGAGAAGGAGAAGGTGAACAGC
CTCAAGGAGCAGGTGGCTGCTGCCAAGGTGGAAGCCGGGCATAACCGCCGCCACTTCAAGGCGGCCTCCT
TGGAGCTGAGTGAGGTGAAGAAGGAGCTGCAGGCCAAGGAACACCTGGTGCAGAAGCTGCAGGCCGAGGC
CGACGACCTTCAGATTCGGGAGGGGAAACATTCCCAGGAGATAGCACAGTTCCAAGCAGAGCTGGCCGAG
GCCCGGGCACAGCTCCAGCTCCTGCAGAAGCAGCTGGACGAGCAGCTCAGCAAACAGCCCGTGGGAAACC
AAGAGATGGAAAATCTCAAATGGGAGGTGGATCAGAAAGAAAGAGAAATCCAGTCCTTGAAGCAGCAGCT
GGACTTGACGGAGCAGCAGGGCAGGAAGGAACTGGAAGGGCTACAGCAGCTGCTGCAGAACGTCAAGTCT
GAGTTGGAGATGGCCCAGGAAGACCTGTCCATGACCCAGAAGGATAAATTTATGCTCCAGGCAAAAGTGT
CGGAGCTGAAGAACAACATGAAGACCCTGCTCCAGCAGAACCAGCAGCTCAAGCTGGACCTACGCCGCGG
CGCGGCCAAGACGAGAAAGGAGCCGAAAGGCGAGGCCAGCTCTTCCAACCCTGCCACGCCCATCAAGATC
CCGGACTGCCCAGTTCCCGCCTCGCTGCTGGAGGAGCTGCTGAGACCACCGCCCGCCGTGAGCAAGGAGC
CCCTCAAGAACCTGAACAGCTGCCTCCAGCAGCTCAAGCAGGAGATGGACAGCCTGCAGCGCCAGATGGA
GGAGCACGCCCTGACGGTGCACGAGTCTCTGTCCTCGTGGACGCCGCTGGAGCCAGCCACTGCCAGCCCT
GTGCCCCCGGGGGGTCACGCCGGCCCACGCGGCGACCCACAGAGACACAGTCAGAGCAGGGCTTCCAAAG
AAGGGCCGGGAGAGTGA

Translation (1498 aa):
MDGASAEQDGLQEDRSHSGPSSLPEAPLKPPGPLVPPDQQDKVQCAEVNRASTEGESPDGPGQGGLCQNG
PTPPFPDPPSSLDPTTSPVGPDASPGVAGFHDNLRKSQGTSAEGSVRKEALQSLRLSLPMQETQLCSTDS
PLPLEKEEQVRLQARKWLEEQLKQYRVKRQQERSSQPATKTRLFSTLDPELMLNPENLPRASTLAMTKEY
SFLRTSVPRGPKVGSLGLPAHPREKKTSKSSKIRSLADYRTEDSNAGNSGGNVPAPDSTKGSLKQNRSSA
ASVVSEISLSPDTDDRLENTSLAGDSVSEVDGNDSDSSSYSSASTRGTYGILSKTVGTQDTPYMVNGQEI
PADTLGQFPSIKDVLQAAAAEHQDQGQEVNGEVRSRRDSICSSVSLESSAAETQEEMLQVLKEKMRLEGQ
LEALSLEASQALKEKAELQAQLAALSTKLQAQVECSHSSQQRQDSLSSEVDTLKQSCWDLERAMTDLQNM
LEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLTSK
LKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSQQLTETQHR
SMKEKGRIAAQLQGIEADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQ
VKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICL
LQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQK
IKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQ
VRQHMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRR
LGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQGGSSDSSLALHERIQALEAE
LQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKLALELEHEKGK
LTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQASLEKEKEKVNS
LKEQVAAAKVEAGHNRRHFKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQFQAELAE
ARAQLQLLQKQLDEQLSKQPVGNQEMENLKWEVDQKEREIQSLKQQLDLTEQQGRKELEGLQQLLQNVKS
ELEMAQEDLSMTQKDKFMLQAKVSELKNNMKTLLQQNQQLKLDLRRGAAKTRKEPKGEASSSNPATPIKI
PDCPVPASLLEELLRPPPAVSKEPLKNLNSCLQQLKQEMDSLQRQMEEHALTVHESLSSWTPLEPATASP
VPPGGHAGPRGDPQRHSQSRASKEGPGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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