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Report for CCDS92870.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92870.1 Public Homo sapiens 2 R3HDM1 24 110 108 CCDS HistoryNCBI Gene:23518Re-query CCDS DB by CCDS ID:92870.1Re-query CCDS DB by GeneID:23518See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92870.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000683871.1 ENSP00000506980.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000683871.1Link to Ensembl Protein Viewer:ENSP00000506980.1Re-query CCDS DB by Nucleotide ID:ENST00000683871Re-query CCDS DB by Protein ID:ENSP00000506980
Original member Current member NCBI NM_001378107.1 NP_001365036.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001378107.1Link to Protein Sequence:NP_001365036.1Re-query CCDS DB by Nucleotide ID:NM_001378107Re-query CCDS DB by Protein ID:NP_001365036Link to BLAST:NP_001365036.1

Chromosomal Locations for CCDS 92870.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 135604846 135605016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135616152 135616193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135616668 135616757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135621494 135621608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135622654 135622732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135631718 135631777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135631861 135632001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135635890 135635998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135636088 135636183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135638618 135638655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135638739 135638789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135638896 135639122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135641536 135641790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135645379 135645527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135649902 135650003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135651730 135652032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135661270 135661393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135675332 135675486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135680173 135680324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135709433 135709536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135710059 135710231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135715550 135715694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135721924 135722006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135722469 135722553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135723937 135724292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3405 nt):
ATGAGGATGTCTGATACTGTTACTGTAAAAGATGAAACTGCAACAATGAAGGATTTGGAGGCAGAAGTGA
AAGATACAACCAGAGTTGAAAATCTTATCAAATCAGAAAACTATGGGAAGATTTTGGTAGAGAAGAATGA
ACATTGTATTGAGAACAATATAGATTTGCAGCGGCCATTGCAGTCATTTGGACAGACAGGAAAAAGGTCT
AAGTCAAGCTCAAAGTTAAAGCTAGTTCGGAGCCTTGCAGTGTGTGAAGAATCTCCACCACCCCCTGCAC
CAGAGATATCACAGGAGAACCAGGAGAAAATTCAGATCCAGTTAACACAATCATTTGAGAAAGAAGAGAA
GCCCTCAAAAGATGAAGCAGAAAAAGAAAAGGCCAGTGATAAGTTGCCCAGAAAAATGTTATCAAGAGAT
TCCAGTCAAGAATACACTGATTCAACTGGCATAGATCTACATGAATTTTTAGTAAATACATTAAAAAACA
ATCCCAGGGACAGAATGATGCTGCTGAAATTGGAACAAGAAATTTTAGATTTCATTGGTAATAATGAGTC
TCCACGTAAAAAATTCCCCCCAATGACATCTTACCATAGGATGCTATTACACAGAGTAGCCGCTTACTTT
GGATTAGACCACAATGTTGATCAGAGTGGGAAGTCTGTCATAGTAAACAAAACTAGCAATACAAGAATAC
CTGATCAGAAATTTAATGAACATATTAAGGATGATAAAGGTGAAGACTTTCAGAAACGTTATATCCTCAA
GAGAGATAACTCTAGCTTTGACAAAGATGATAACCAGATGAGAATACGTTTGAAAGATGACAGAAGAAGC
AAATCTATAGAAGAAAGAGAAGAAGAGTACCAGAGAGCCAGAGACCGAATATTTTCCCAAGATTCCCTGT
GTTCCCAAGAGAATTACATTATTGACAAAAGACTCCAAGACGAGGATGCCAGTAGTACCCAGCAGAGGCG
CCAGATATTTAGAGTTAATAAAGATGCTTCAGGGAGATCTACAAATAGCCATCAAAGCAGCACTGAGAAT
GAGTTGAAGTACTCGGAACCACGACCCTGGAGCAGCACAGATTCAGACAGCTCTCTTCGAAACCTGAAAC
CTGCTGTAACCAAAGCCAGCAGCTTCAGTGGAATCTCAGTCCTGACAAGAGGTGATAGTTCTGGAAGCAG
CAAAAGCATAGGCAGGCTTTCAAAAACAGGTTCTGAGTCTTCTGGTAGTGTAGGGTCATCTACAGGCTCT
CTTTCTCACATCCAGCAGCCTCTTCCAGGTACAGCTCTCAGCCAGTCTTCTCATGGCGCACCTGTCGTCT
ATCCAACTGTCAGCACTCATAGTTCTCTTTCCTTTGATGGTGGCCTAAATGGGCAAGTCGCATCTCCTAG
CACTAGCTTCTTTTTGCTTCCCTTGGAAGCGGCAGGCATACCACCTGGCAGTATTCTGATCAACCCACAA
ACAGGTCAGCCCTTCATAAACCCAGATGGGAGTCCAGTTGTGTATAATCCTCCTATGACTCAACAACCAG
TTAGATCCCAAGTGCCTGGACCTCCACAGCCACCTCTGCCAGCCCCACCTCAACAACCAGCAGCTAATCA
CATTTTCTCACAGCCTGTTCATCCTCTGCAGTCCTCTTCACAGCCTGTTCAGTACTCTACAGCCCCTTAC
CCATCCCCGTTCCTGCCAGTCTCACCCACCCAGCAATACTCTGTGCAGGATAACCTAGGGTCTCAGTTTA
GCCACATGAGTCTTGCTCGCCAGCCATCTGCTGATGGTTCTGACCCTCATGCCGCCATGTTCCAGTCCAC
TGTGGTTCTTCAGTCTCCACAGCAGTCTGGTTATATCATGACAGCAGCCCCTCCACCACATCCTCCTCCA
CCGCCACCACCACCACCTCCTCCTCCTCCCCTACCACCTGGGCAGCCAGTCCCTACTGCTGGATATCCTG
CCTCTGGTCATCCTGTCAGCCAGCCTGTGCTCCAGCAGCAGGGATATATTCAGCAGCCATCACCACAGAT
GCCAGCCTGTTATTGCGCTCCAGGCCACTATCACTCCAGCCAACCTCAGTATCGCCCAGTCCCTTCTGTT
CATTACAATTCACATCTAAACCAACCACTGCCACAACCTGCGCAGCAGACAGGTTATCAAGTTATACCCA
ACCAGCAGCAAAACTACCAAGGAATAGTTGGAGTTCAGCAACCCCAGAGTCAGAGCCTAGTCAGTGGCCA
ACCCAACAGCATTGGAAATCAGATTCAAGGAGTGGTCATCCCCTATACTTCAGTGCCAACATATCAGGTT
TCACTGCCTCAAGGTTCTCAAGGAATTCCCCATCAGACTTATCAACAGCCTGTTATGTTCCCTAATCAGT
CTAATCAAGGATCTATGCCCACAACAGGAATGCCTGTTTACTATAGTGTCATTCCACCTGGTCAACAAAA
CAATTTAAGCTCTTCAGTAGGTTACCTGCAACATCCAGGATCAGAACAAGTACAATTTCCTCGAACCACT
TCACCATGCAGTTCCCAGCAGCTTCAAGGCCACCAATGTACAGCTGGACCACCACCGCCACCTGGTGGGG
GGATGGTGATGATGCAGCTCAGTGTACCAAACAATCCACAATCTTGTGCCCACTCACCCCCGCAGTGGAA
ACAAAACAAATATTACTGTGATCACCAGAGAGGACAGAAGTGTGTAGAATTTAGCAGTGTAGACAATATT
GTCCAGCACAGCCCTCAACTCAGTAGCCCCATTATTTCACCAGCTCAGTCGCCAGCACCAGCTCAGCTGT
CCACCCTGAAAACTGTACGTCCCTCTGGACCACCACTTTCCATCATGCCCCAATTTTCTAGACCTTTTGT
CCCCGGGCAAGGAGATTCCAGGTATCCATTACTTGGCCAGCCACTGCAGTACAATCCTCCTGCTGTTCTG
CACGGACACATTCCAAACCAACAGGGTCAGCCTGGCAGCAGGCATGGAAACCGAGGAAGGAGACAAGCTA
AAAAAGCTGCATCCACAGACCTTGGAGCAGGAGAAACAGTTGTTGGGAAGGTCTTGGAAATTACTGAACT
ACCAGATGGAATAACTCGCATGGAAGCTGAAAAGCTTTTTGGGGAACTCTTTAAAATTGGCGCCAAGATC
CGGTGGCTCCGGGACCCCCAGTCCCAACCACGTCGTCACCCCCTCTGCTGTGGCAGTGGGGACAACACTG
CCAACCCTGAACGCTCTAAACCCAGTGACTTGGCCTCCACCTACACCGTCTTAGCCACATTCCCCTCCAT
TTCAGCTGCACAGAATGCACTGAAGAAACAAATTAACTCAGTTAACAAGTTTAAGCTGAGAACAAGCAAG
AAGCACTATGACTTTCACATTTTGGAAAGGGCAAGTTCTCAGTAA

Translation (1134 aa):
MRMSDTVTVKDETATMKDLEAEVKDTTRVENLIKSENYGKILVEKNEHCIENNIDLQRPLQSFGQTGKRS
KSSSKLKLVRSLAVCEESPPPPAPEISQENQEKIQIQLTQSFEKEEKPSKDEAEKEKASDKLPRKMLSRD
SSQEYTDSTGIDLHEFLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRKKFPPMTSYHRMLLHRVAAYF
GLDHNVDQSGKSVIVNKTSNTRIPDQKFNEHIKDDKGEDFQKRYILKRDNSSFDKDDNQMRIRLKDDRRS
KSIEEREEEYQRARDRIFSQDSLCSQENYIIDKRLQDEDASSTQQRRQIFRVNKDASGRSTNSHQSSTEN
ELKYSEPRPWSSTDSDSSLRNLKPAVTKASSFSGISVLTRGDSSGSSKSIGRLSKTGSESSGSVGSSTGS
LSHIQQPLPGTALSQSSHGAPVVYPTVSTHSSLSFDGGLNGQVASPSTSFFLLPLEAAGIPPGSILINPQ
TGQPFINPDGSPVVYNPPMTQQPVRSQVPGPPQPPLPAPPQQPAANHIFSQPVHPLQSSSQPVQYSTAPY
PSPFLPVSPTQQYSVQDNLGSQFSHMSLARQPSADGSDPHAAMFQSTVVLQSPQQSGYIMTAAPPPHPPP
PPPPPPPPPPLPPGQPVPTAGYPASGHPVSQPVLQQQGYIQQPSPQMPACYCAPGHYHSSQPQYRPVPSV
HYNSHLNQPLPQPAQQTGYQVIPNQQQNYQGIVGVQQPQSQSLVSGQPNSIGNQIQGVVIPYTSVPTYQV
SLPQGSQGIPHQTYQQPVMFPNQSNQGSMPTTGMPVYYSVIPPGQQNNLSSSVGYLQHPGSEQVQFPRTT
SPCSSQQLQGHQCTAGPPPPPGGGMVMMQLSVPNNPQSCAHSPPQWKQNKYYCDHQRGQKCVEFSSVDNI
VQHSPQLSSPIISPAQSPAPAQLSTLKTVRPSGPPLSIMPQFSRPFVPGQGDSRYPLLGQPLQYNPPAVL
HGHIPNQQGQPGSRHGNRGRRQAKKAASTDLGAGETVVGKVLEITELPDGITRMEAEKLFGELFKIGAKI
RWLRDPQSQPRRHPLCCGSGDNTANPERSKPSDLASTYTVLATFPSISAAQNALKKQINSVNKFKLRTSK
KHYDFHILERASSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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