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Report for CCDS92878.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92878.1 Public Homo sapiens 2 PRPF40A 24 110 108 CCDS HistoryNCBI Gene:55660Re-query CCDS DB by CCDS ID:92878.1Re-query CCDS DB by GeneID:55660See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92878.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000698772.1 ENSP00000513920.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698772.1Link to Ensembl Protein Viewer:ENSP00000513920.1Re-query CCDS DB by Nucleotide ID:ENST00000698772Re-query CCDS DB by Protein ID:ENSP00000513920
Original member Current member NCBI NM_001365600.4 NP_001352529.1 Accepted alive Link to Nucleotide Sequence:NM_001365600.4Link to Protein Sequence:NP_001352529.1Re-query CCDS DB by Nucleotide ID:NM_001365600Re-query CCDS DB by Protein ID:NP_001352529Link to BLAST:NP_001352529.1
Original member Current member NCBI NM_001395472.1 NP_001382401.1 Accepted alive Link to Nucleotide Sequence:NM_001395472.1Link to Protein Sequence:NP_001382401.1Re-query CCDS DB by Nucleotide ID:NM_001395472Re-query CCDS DB by Protein ID:NP_001382401Link to BLAST:NP_001382401.1

Chromosomal Locations for CCDS 92878.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 152656306 152656398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152657889 152658020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152658948 152659009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152659093 152659189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152659270 152659356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152662603 152662698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152663035 152663172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152663655 152663771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152663876 152663979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152664138 152664252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152669137 152669270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152670231 152670381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152671273 152671381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152672459 152672623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152672978 152673042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152673598 152673706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152676405 152676779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152677451 152677475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152679056 152679109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152679352 152679472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152681226 152681336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152690962 152690978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152693038 152693068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152694542 152694622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152715995 152716126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152717356 152717439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2805 nt):
ATGTGTAGCGGCAGTGGCCGCCGGCGGAGCAGTCTGAGCCCGACGATGAGGCCGGGGACGGGAGCTGAGC
GTGGAGGCCTCATGATGGGGCACCCTGGCATGCATTATGCCCCAATGGGAATGCACCCTATGGGTCAGAG
AGCGAATATGCCTCCTGTACCTCATGGAATGATGCCGCAGATGATGCCCCCTATGGGAGGGCCACCAATG
GGACAAATGCCTGGAATGATGTCGTCAGTAATGCCTGGAATGATGATGTCTCATATGTCTCAGGCTTCCA
TGCAGCCTGCCTTACCGCCAGGAGTAAATAGTATGGATGTAGCAGCAGGTACAGCATCTGGTGCAAAATC
AATGTGGACTGAACATAAATCACCTGATGGAAGGACTTACTACTACAACACTGAAACCAAACAGTCTACC
TGGGAGAAACCAGATGATCTTAAAACACCTGCTGAGCAACTCTTATCTAAATGCCCCTGGAAGGAATACA
AATCAGATTCTGGAAAGCCTTACTATTATAATTCTCAAACAAAAGAATCTCGCTGGGCCAAACCTAAAGA
ACTTGAGGATCTTGAAGGATACCAGAATACCATTGTTGCTGGAAGTCTTATTACAAAATCAAACCTGCAT
GCAATGATCAAAGCTGAAGAAAGCAGTAAGCAAGAAGAGTGCACCACAACATCAACAGCCCCAGTCCCTA
CAACAGAAATTCCGACCACAATGAGCACCATGGCTGCTGCCGAAGCAGCAGCTGCTGTTGTTGCAGCAGC
AGCAGCGGCAGCAGCAGCAGCAGCTGCAGCCAATGCTAATGCTTCCACTTCTGCTTCTAATACTGTCAGT
GGAACTGTTCCAGTTGTTCCTGAGCCTGAAGTTACTTCCATTGTTGCTACTGTTGTAGATAATGAGAATA
CAGTAACTATTTCAACTGAGGAACAAGCACAACTTACTAGTACCCCTGCTATTCAGGATCAAAGTGTGGA
AGTATCCAGTAATACTGGAGAAGAAACATCTAAGCAAGAAACTGTAGCTGATTTTACTCCCAAAAAAGAA
GAGGAGGAGAGCCAACCAGCAAAGAAAACATACACTTGGAATACAAAGGAAGAGGCAAAGCAAGCTTTTA
AAGAATTATTGAAAGAAAAGCGGGTACCATCGAATGCTTCATGGGAGCAGGCTATGAAAATGATTATTAA
TGATCCACGATACAGTGCTTTGGCAAAGTTAAGTGAAAAAAAGCAAGCCTTTAATGCCTATAAAGTCCAG
ACAGAAAAAGAAGAAAAAGAAGAAGCAAGATCAAAGTACAAAGAGGCTAAGGAATCCTTTCAGCGTTTTC
TTGAAAATCATGAGAAAATGACTTCTACAACCAGATACAAAAAAGCAGAGCAAATGTTTGGAGAGATGGA
AGTTTGGAATGCAATATCAGAACGTGATCGTCTTGAAATCTATGAAGATGTTTTGTTCTTTCTTTCAAAA
AAAGAAAAGGAACAAGCAAAGCAGTTGCGAAAGAGAAATTGGGAAGCCTTAAAAAACATACTTGACAACA
TGGCTAATGTAACATACTCTACCACTTGGTCTGAAGCCCAGCAGTATCTGATGGATAATCCAACTTTTGC
AGAAGATGAGGAGTTACAAAATATGGACAAAGAAGATGCATTAATTTGCTTTGAAGAACACATTCGGGCT
TTAGAAAAGGAGGAAGAAGAAGAAAAACAGAAGAGTTTGCTGAGAGAAAGGAGACGACAGCGAAAAAATA
GGGAATCTTTCCAGATATTTTTAGATGAATTACATGAACATGGACAACTGCATTCTATGTCATCTTGGAT
GGAATTGTATCCAACTATTAGTTCTGATATTAGATTCACTAATATGCTTGGTCAGCCTGTTTTTTCATTA
GGATCAACTGCACTTGATCTTTTCAAGTTTTATGTTGAGGATCTTAAAGCACGTTATCATGACGAGAAGA
AGATAATAAAAGACATTCTAAAGGATAAAGGATTTGTAGTTGAAGTAAACACTACTTTTGAAGATTTTGT
GGCGATAATCAGTTCAACTAAAAGATCAACTACATTAGATGCTGGAAATATCAAATTGGCTTTCAATAGT
TTACTAGAAAAGGCAGAAGCCCGTGAACGTGAAAGAGAAAAAGAAGAGGCTCGGAAGATGAAACGAAAAG
AATCTGCATTTAAGAGTATGTTAAAACAAGCTGCTCCTCCGATAGAATTGGATGCTGTCTGGGAAGATAT
CCGTGAGAGATTTGTAAAAGAGCCAGCATTTGAGGACATAACTCTAGAATCTGAAAGAAAACGAATATTT
AAAGATTTTATGCATGTGCTTGAGCATGAATGTCAGCATCATCATTCAAAGAACAAGAAACATTCTAAGA
AATCTAAAAAACATCATAGGAAACGTTCCCGCTCTCGATCGGGGTCAGATTCAGATGATGATGATAGCCA
TTCAAAGAAAAAAAGACAGCGATCAGAGTCTCGTTCTGCTTCAGAACATTCTTCTAGTGCAGAGTCTGAG
AGAAGTTATAAAAAGTCAAAAAAGCATAAGAAGAAAAGTAAGAAGAGGAGACATAAATCTGACTCTCCAG
AATCCGATGCTGAGCGAGAGAAGGATAAAAAAGAAAAAGATCGGGAAAGTGAAAAAGACAGAACTAGACA
AAGATCAGAATCAAAACACAAATCGCCTAAGAAAAAGACTGGAAAGGATTCTGGTAATTGGGATACTTCT
GGCAGCGAACTGAGTGAAGGGGAATTGGAAAAGCGCAGAAGAACCCTTTTGGAGCAACTGGATGATGATC
AATAA

Translation (934 aa):
MCSGSGRRRSSLSPTMRPGTGAERGGLMMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPM
GQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNSMDVAAGTASGAKSMWTEHKSPDGRTYYYNTETKQST
WEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGYQNTIVAGSLITKSNLH
AMIKAEESSKQEECTTTSTAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANANASTSASNTVS
GTVPVVPEPEVTSIVATVVDNENTVTISTEEQAQLTSTPAIQDQSVEVSSNTGEETSKQETVADFTPKKE
EEESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQ
TEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSK
KEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRA
LEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPVFSL
GSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNS
LLEKAEAREREREKEEARKMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLESERKRIF
KDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESE
RSYKKSKKHKKKSKKRRHKSDSPESDAEREKDKKEKDRESEKDRTRQRSESKHKSPKKKTGKDSGNWDTS
GSELSEGELEKRRRTLLEQLDDDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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