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Report for CCDS92908.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92908.1 Public Homo sapiens 2 PRKRA 24 110 108 CCDS HistoryNCBI Gene:8575Re-query CCDS DB by CCDS ID:92908.1Re-query CCDS DB by GeneID:8575See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92908.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000678845.1 ENSP00000503011.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000678845.1Link to Ensembl Protein Viewer:ENSP00000503011.1Re-query CCDS DB by Nucleotide ID:ENST00000678845Re-query CCDS DB by Protein ID:ENSP00000503011
Original member Current member EBI ENST00000678775.1 ENSP00000504030.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000678775.1Link to Ensembl Protein Viewer:ENSP00000504030.1Re-query CCDS DB by Nucleotide ID:ENST00000678775Re-query CCDS DB by Protein ID:ENSP00000504030
Original member Current member NCBI NM_001316362.2 NP_001303291.1 Accepted alive Link to Nucleotide Sequence:NM_001316362.2Link to Protein Sequence:NP_001303291.1Re-query CCDS DB by Nucleotide ID:NM_001316362Re-query CCDS DB by Protein ID:NP_001303291Link to BLAST:NP_001303291.1

Chromosomal Locations for CCDS 92908.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 178432097 178432254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178436145 178436319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178441610 178441704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178443267 178443384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178444422 178444478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGCCTGACCCTTCCAAGCAACCAAAGAACCAGCTTAATCCTATTGGTTCATTACAGGAATTGGCTATTC
ATCATGGCTGGAGACTTCCTGAATATACCCTTTCCCAGGAGGGAGGACCTGCTCATAAGAGAGAATATAC
TACAATTTGCAGGCTAGAGTCATTTATGGAAACTGGAAAGGGGGCATCAAAAAAGCAAGCCAAAAGGAAT
GCTGCTGAGAAATTTCTTGCCAAATTTAGTAATATTTCTCCAGAGAACCACATTTCTTTAACAAATGTAG
TAGGACATTCTTTAGGATGTACTTGGCATTCCTTGAGGAATTCTCCTGGTGAAAAGATCAACTTACTGAA
AAGAAGCCTCCTTAGTATTCCAAATACAGATTACATCCAGCTGCTTAGTGAAATTGCCAAGGAACAAGGT
TTTAATATAACATATTTGGATATAGATGAACTGAGCGCCAATGGACAATATCAATGTCTTGCTGAACTGT
CCACCAGCCCCATCACAGTCTGTCATGGCTCCGGTATCTCCTGTGGCAATGCACAAAGTGATGCAGCTCA
CAATGCTTTGCAGTATTTAAAGATAATAGCAGAAAGAAAGTAA

Translation (200 aa):
MPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRN
AAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYIQLLSEIAKEQG
FNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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