NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS92944.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92944.1 Public Homo sapiens 2 ZNF142 24 110 108 CCDS HistoryNCBI Gene:7701Re-query CCDS DB by CCDS ID:92944.1Re-query CCDS DB by GeneID:7701See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92944.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000411696.7 ENSP00000398798.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000411696.7Link to Ensembl Protein Viewer:ENSP00000398798.3Re-query CCDS DB by Nucleotide ID:ENST00000411696Re-query CCDS DB by Protein ID:ENSP00000398798
Original member Current member NCBI NM_001366290.3 NP_001353219.1 Accepted alive Link to Nucleotide Sequence:NM_001366290.3Link to Protein Sequence:NP_001353219.1Re-query CCDS DB by Nucleotide ID:NM_001366290Re-query CCDS DB by Protein ID:NP_001353219Link to BLAST:NP_001353219.1
Original member Current member NCBI NM_001379659.1 NP_001366588.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001379659.1Link to Protein Sequence:NP_001366588.1Re-query CCDS DB by Nucleotide ID:NM_001379659Re-query CCDS DB by Protein ID:NP_001366588Link to BLAST:NP_001366588.1
Original member Current member NCBI NM_001379660.1 NP_001366589.1 Accepted alive Link to Nucleotide Sequence:NM_001379660.1Link to Protein Sequence:NP_001366589.1Re-query CCDS DB by Nucleotide ID:NM_001379660Re-query CCDS DB by Protein ID:NP_001366589Link to BLAST:NP_001366589.1
Original member Current member NCBI NM_001379661.1 NP_001366590.1 Accepted alive Link to Nucleotide Sequence:NM_001379661.1Link to Protein Sequence:NP_001366590.1Re-query CCDS DB by Nucleotide ID:NM_001379661Re-query CCDS DB by Protein ID:NP_001366590Link to BLAST:NP_001366590.1

Chromosomal Locations for CCDS 92944.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 218638339 218638808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218640664 218640769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218642028 218645064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218646171 218646348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218648635 218649459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218650359 218650526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218651701 218652300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218656150 218656429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5664 nt):
ATGACAGACCCCCTTTTGGACTCACAGCCAGCCAGTAGCACCGGGGAGATGGATGGACTGTGCCCTGAGC
TATTGCTGATCCCCCCGCCTCTCTCTAACCGTGGAATCCTGGGGCCTGTCCAGAGCCCCTGTCCTTCCCG
GGACCCTGCACCTATACCTACTGAGCCAGGCTGCCTGCTGGTAGAGGCCACAGCAACTGAAGAGGGACCA
GGGAACATGGAGATCATTGTGGAGACAGTAGCTGGAACCCTGACCCCAGGTGCTCCTGGAGAGACCCCAG
GTGTCCTGGTAAAGGTGGTGGAGGTGTACTTCTGTGAGCGCTGTGAACAGAGCTTCGCAGAGCCCACTCT
GCTGGCCCTGCACCAGTGCAGTGAGACCCATATACAGCCTGTGCAGGGCCTCTCTAGCCCCCCATGCTCT
GTAGAGCTGCCTCCCAGCAACCCAACCCTCCCTGGCCCTCTGCAGGGCCAGAGCCCGCCAGTTAGCCCCC
TATCATGCCCTGTGTGTAGACAGGAGTTTGCCCAACCCCAGGCCCTGAAGAGCCACTTCAAGATTCACCG
GGGCACTCCTGACACCTTCTCCTGCCCAGAATCTGGCTGTGTGTTCTCTGCTGAAGATCGCAAGGGTCTG
CAGCACCACCTGAGGCAGACTCACAGAGCAGTTCCTGTGCCCTGTTCTTTCCGGGGCTGCCCCCTGCTTT
TCGGGAGCCAGCAGGGCATGGAGCTGCACCGGCAGGCGCATTACCCTTTCCACTGCAGCCACTGCAGCTT
CATAGGCTCCAACGTCAAACTCTTCCGGCAGCATCAGCGGAGCCATGGTGCTGGGACACAGGGAGAACTT
TCTGCCGTTCAGGGCCTTCCATCCCAGGAGCTGCTGCCAGCTCCCAAACTGCCTCCAGGAGAGAGAGAAC
CTTCACAGGAAGCAGGTACACCCTTGCCTGGGCAGGAGACAGCTGAAGAGGAGAATGTAGAGAAAGAAGA
GAAGAGTGACACCCAGAAGGACTCCCAAAAGGCTGTGGATAAAGGCCAAGGGGCTCAGCGGCTGGAAGGG
GATGTGGTCTCTGGCACCGAGTCCCTCTTCAAGACCCATATGTGTCCAGAGTGTAAGCGCTGCTTTAAGA
AGCGGACTCATCTGGTGGAGCACCTGCATCTCCACTTCCCAGACCCCAGCCTCCAGTGCCCTAACTGCCA
GAAGTTCTTCACCAGTAAGAGCAAGCTCAAGACCCATCTGCTGCGGGAGCTGGGTGAAAAGGCCCACCAC
TGCCCACTGTGCCACTACAGTGCGGTGGAGAGGAATGCACTCAACCGCCACATGGCCAGCATGCATGAAG
ATATTTCCAACTTCTACTCAGACACCTATGCCTGTCCTGTCTGCCGTGAGGAATTCCGCCTCAGCCAGGC
CCTAAAGGAGCACCTCAAGAGCCACACGGCAGCAGCCGCAGCAGAGCCATTACCCCTTCGCTGCTTTCAG
GAGGGCTGCAGCTATGCAGCACCCGACCGCAAGGCCTTCATTAAGCACCTGAAGGAGACCCATGGGGTGC
GGGCTGTGGAGTGCCGCCATCACTCATGTCCCATGCTCTTTGCCACAGCCGAAGCCATGGAGGCCCACCA
CAAGAGTCACTACGCCTTCCACTGCCCCCACTGTGATTTTGCTTGTTCCAATAAGCACCTATTCCGTAAA
CACAAGAAGCAGGGCCACCCTGGCAGTGAAGAGCTGCGCTGCACCTTCTGCCCCTTTGCCACCTTCAACC
CAGTGGCTTACCAGGATCATGTAGGCAAGATGCATGCTCATGAAAAGATCCACCAGTGTCCTGAGTGCAA
CTTTGCCACTGCCCACAAGAGGGTGCTCATCCGACACATGCTTCTACATACGGGTGAGAAGCCCCACAAG
TGTGAGCTGTGTGACTTCACATGCCGAGACGTGAGCTACCTATCCAAGCACATGCTGACCCACTCCAACA
CCAAGGATTACATGTGCACTGAATGTGGCTATGTCACCAAGTGGAAGCACTACCTCCGTGTGCACATGCG
AAAACATGCAGGGGACCTCAGGTATCAGTGCAACCAGTGCTCCTATCGCTGTCACCGGGCTGATCAGCTG
AGCAGCCACAAGCTGCGGCATCAGGGCAAGTCTCTGATGTGTGAGGTGTGTGCCTTCGCCTGCAAGCGGA
AGTATGAGCTGCAGAAGCACATGGCTTCCCAGCACCACCCTGGCACACCGGCCCCACTCTACCCTTGCCA
CTACTGCAGTTACCAGAGCCGCCACAAGCAGGCTGTGCTGAGCCATGAGAACTGCAAGCATACCCGCCTC
CGTGAGTTCCACTGTGCCCTCTGTGACTACCGCACCTTCAGCAACACCACACTCTTGTTCCATAAACGCA
AGGCCCATGGCTATGTACCTGGAGACCAGGCCTGGCAGCTCCGCTATGCAAGCCAGGAGCCAGAAGGGGC
CATGCAGGGCCCAACACCCCCACCAGATTCAGAGCCCTCAAACCAGCTGTCAGCCCGACCTGAGGGGCCA
GGTCACGAACCTGGGACTGTGGTGGACCCCAGCTTGGACCAGGCCCTGCCAGAGATGAGTGAGGAGGTCA
ACACTGGAAGACAGGAGGGCAGTGAGGCTCCCCATGGGGGTGACCTGGGTGGCAGTCCCAGCCCAGCAGA
GGTGGAGGAGGGCAGCTGCACACTACACCTAGAGGCCCTGGGAGTAGAGCTGGAGTCTGTGACTGAGCCA
CCCCTTGAGGAGGTCACTGAAACAGCCCCTATGGAGTTCAGGCCCCTGGGACTGGAAGGGCCAGATGGAC
TGGAAGGACCAGAGCTATCTAGCTTTGAAGGTATTGGGACTTCTGACTTGAGTGCTGAAGAAAATCCCCT
TCTGGAAAAGCCAGTGTCTGAGCCCTCCACAAATCCTCCATCCTTAGAGGAGGCTCCTAACAACTGGGTA
GGAACCTTCAAGACAACTCCACCTGCTGAGACAGCACCCTTGCCCCCATTACCTGAGTCAGAGTCATTAC
TCAAGGCCCTAAGGAGACAGGACAAAGAACAAGCAGAGGCATTGGTGCTAGAGGGGCGGGTGCAGATGGT
AGTGATCCAGGGAGAGGGGCGAGCCTTCCGCTGCCCACACTGCCCTTTTATCACTCGCCGGGAGAAGGCC
CTGAATCTGCACTCCAGGACTGGGTGCCAAGGCCGCCGAGAGCCCCTGCTGTGCCCCGAGTGTGGGGCTA
GCTTCAAGCAACAACGCGGCCTCAGCACCCACCTGCTGAAGAAGTGCCCTGTTCTACTCAGAAAGAACAA
GGGCTTGCCCAGACCAGATTCACCCATCCCTCTGCAACCTGTGCTCCCAGGTACCCAGGCCTCAGAGGAC
ACAGAAAGTGGGAAGCCCCCACCTGCATCACAAGAAGCAGAGCTACTGCTTCCAAAAGATGCTCCTTTGG
AGCTTCCCAGGGAGCCAGAAGAAACAGAAGAGCCTCTTGCCACAGTCTCTGGTTCCCCAGTCCCTCCTGC
AGGAAACTCCTTGCCCACAGAGGCCCCTAAGAAGCACTGCTTTGACCCAGTCCCTCCTGCAGGAAACTCC
TCACCCACGGAGGCCCCTAAGAAGCACCACCTTGACCCAGTCCCTCCTGCAGGAAACTCCTCACCCACAG
AGGCCCTGAAGAAGCACCGCTTTGAGCAGGGCAAGTTTCACTGCAACTCCTGCCCATTCCTTTGTTCCCG
GCTCTCCTCTATTACCTCTCACGTGGCTGAAGGCTGCAGGGGGGGACGTGGCGGGGGAGGAAAACGAGGG
ACCCCCCAGACCCAGCCTGATGTGTCCCCGTTGAGCAATGGGGACTCTGCTCCCCCGAAGAATGGGAGTA
CAGAGTCCAGCTCTGGTGATGGGGATACAGTTCTGGTTCAAAAGCAGAAGGGGGCTCGCTTCTCCTGCCC
TACATGTCCCTTTAGCTGCCAGCAGGAACGGGCTCTGAGGACTCACCAGATCCGGGGCTGCCCCCTCGAG
GAGTCTGGAGAGCTGCACTGCAGCCTCTGCCCATTCACTGCTCCTGCTGCCACTGCCTTAAGGCTCCACC
AGAAGCGGAGGCACCCCACTGCAGCCCCAGCCCGTGGGCCCCGGCCCCATCTACAGTGTGGGGACTGTGG
CTTCACCTGTAAACAGAGCCGTTGCATGCAGCAGCACCGGCGGCTCAAGCACGAGGGGGTGAAGCCCCAT
CAGTGCCCCTTCTGTGACTTTTCGACCACCAGACGGTACCGGTTAGAGGCTCACCAGTCCCGACACACAG
GCATTGGCCGCATCCCCTGCAGCTCTTGCCCCCAGACGTTTGGTACCAACTCGAAACTGCGCTTGCACCG
GTTAAGGGTACATGACAAAACACCTACCCACTTCTGTCCACTTTGTGACTATAGTGGCTACCTTCGCCAT
GACATCACTCGTCATGTCAACAGCTGCCACCAAGGCACCCCAGCCTTTGCCTGCTCCCAGTGTGAAGCCC
AGTTCAGCTCAGAGACAGCACTTAAGCAGCATGCTCTGCGCCGACACCCCGAGCCTGCACAGCCTGCCCC
TGGCTCTCCTGCAGAGACCACTGAGGGCCCCCTGCACTGTTCCCGCTGTGGGTTGCTGTGCCCCAGCCCT
GCCAGCTTACGAGGACACACCCGTAAACAGCACCCACGGCTTGAGTGTGGGGCCTGCCAGGAGGCCTTCC
CTAGCCGACTGGCTCTGGATGAGCACCGGAGGCAGCAGCATTTCAGCCACCGCTGTCAGCTCTGTGACTT
TGCTGCCCGGGAGCGGGTGGGCCTGGTAAAGCACTACCTGGAACAGCATGAGGAGACTTCAGCAGCCGTG
GCAGCCTCAGATGGGGATGGGGATGCTGGCCAGCCCCCGCTACACTGCCCCTTTTGTGACTTCACATGCC
GCCATCAGCTGGTACTAGATCACCATGTGAAAGGGCATGGGGGCACTCGTCTCTACAAGTGCACCGATTG
TGCTTACAGCACCAAGAACCGACAGAAGATCACCTGGCACAGCCGCATCCACACTGGGGAAAAGCCTTAC
CACTGTCACCTCTGCCCCTATGCCTGTGCTGATCCCTCTCGTCTCAAGTACCACATGCGGATCCACAAGG
AGGAACGGAAGTACCTGTGCCCTGAGTGTGGCTACAAGTGCAAGTGGGTCAACCAGCTGAAATACCACAT
GACCAAGCATACAGGACTGAAGCCATACCAGTGTCCCGAGTGTGAGTACTGCACCAACCGGGCTGATGCA
CTGCGTGTGCACCAGGAGACCCGGCATCGAGAAGCACGGGCTTTCATGTGTGAGCAGTGTGGCAAGGCCT
TCAAGACGCGCTTCCTGCTGCGCACCCACCTTCGCAAGCACAGTGAGGCCAAACCCTATGTGTGCAATGT
GTGCCACCGTGCTTTCCGCTGGGCTGCTGGCCTGCGCCATCATGCCCTCACCCACACCGACCGCCACCCC
TTCTTTTGCCGCCTCTGCAACTACAAGGCCAAGCAAAAGTTCCAGGTGGTCAAGCACGTACGCAGGCACC
ACCCTGACCAAGCCGACCCAAACCAGGGTGTGGGCAAAGACCCCACCACCCCCACAGTGCACCTGCATGA
TGTGCAGCTGGAGGATCCCAGCCCTCCTGCTCCTGCCGCTCCCCACACTGGACCTGAGGGCTGA

Translation (1887 aa):
MTDPLLDSQPASSTGEMDGLCPELLLIPPPLSNRGILGPVQSPCPSRDPAPIPTEPGCLLVEATATEEGP
GNMEIIVETVAGTLTPGAPGETPGVLVKVVEVYFCERCEQSFAEPTLLALHQCSETHIQPVQGLSSPPCS
VELPPSNPTLPGPLQGQSPPVSPLSCPVCRQEFAQPQALKSHFKIHRGTPDTFSCPESGCVFSAEDRKGL
QHHLRQTHRAVPVPCSFRGCPLLFGSQQGMELHRQAHYPFHCSHCSFIGSNVKLFRQHQRSHGAGTQGEL
SAVQGLPSQELLPAPKLPPGEREPSQEAGTPLPGQETAEEENVEKEEKSDTQKDSQKAVDKGQGAQRLEG
DVVSGTESLFKTHMCPECKRCFKKRTHLVEHLHLHFPDPSLQCPNCQKFFTSKSKLKTHLLRELGEKAHH
CPLCHYSAVERNALNRHMASMHEDISNFYSDTYACPVCREEFRLSQALKEHLKSHTAAAAAEPLPLRCFQ
EGCSYAAPDRKAFIKHLKETHGVRAVECRHHSCPMLFATAEAMEAHHKSHYAFHCPHCDFACSNKHLFRK
HKKQGHPGSEELRCTFCPFATFNPVAYQDHVGKMHAHEKIHQCPECNFATAHKRVLIRHMLLHTGEKPHK
CELCDFTCRDVSYLSKHMLTHSNTKDYMCTECGYVTKWKHYLRVHMRKHAGDLRYQCNQCSYRCHRADQL
SSHKLRHQGKSLMCEVCAFACKRKYELQKHMASQHHPGTPAPLYPCHYCSYQSRHKQAVLSHENCKHTRL
REFHCALCDYRTFSNTTLLFHKRKAHGYVPGDQAWQLRYASQEPEGAMQGPTPPPDSEPSNQLSARPEGP
GHEPGTVVDPSLDQALPEMSEEVNTGRQEGSEAPHGGDLGGSPSPAEVEEGSCTLHLEALGVELESVTEP
PLEEVTETAPMEFRPLGLEGPDGLEGPELSSFEGIGTSDLSAEENPLLEKPVSEPSTNPPSLEEAPNNWV
GTFKTTPPAETAPLPPLPESESLLKALRRQDKEQAEALVLEGRVQMVVIQGEGRAFRCPHCPFITRREKA
LNLHSRTGCQGRREPLLCPECGASFKQQRGLSTHLLKKCPVLLRKNKGLPRPDSPIPLQPVLPGTQASED
TESGKPPPASQEAELLLPKDAPLELPREPEETEEPLATVSGSPVPPAGNSLPTEAPKKHCFDPVPPAGNS
SPTEAPKKHHLDPVPPAGNSSPTEALKKHRFEQGKFHCNSCPFLCSRLSSITSHVAEGCRGGRGGGGKRG
TPQTQPDVSPLSNGDSAPPKNGSTESSSGDGDTVLVQKQKGARFSCPTCPFSCQQERALRTHQIRGCPLE
ESGELHCSLCPFTAPAATALRLHQKRRHPTAAPARGPRPHLQCGDCGFTCKQSRCMQQHRRLKHEGVKPH
QCPFCDFSTTRRYRLEAHQSRHTGIGRIPCSSCPQTFGTNSKLRLHRLRVHDKTPTHFCPLCDYSGYLRH
DITRHVNSCHQGTPAFACSQCEAQFSSETALKQHALRRHPEPAQPAPGSPAETTEGPLHCSRCGLLCPSP
ASLRGHTRKQHPRLECGACQEAFPSRLALDEHRRQQHFSHRCQLCDFAARERVGLVKHYLEQHEETSAAV
AASDGDGDAGQPPLHCPFCDFTCRHQLVLDHHVKGHGGTRLYKCTDCAYSTKNRQKITWHSRIHTGEKPY
HCHLCPYACADPSRLKYHMRIHKEERKYLCPECGYKCKWVNQLKYHMTKHTGLKPYQCPECEYCTNRADA
LRVHQETRHREARAFMCEQCGKAFKTRFLLRTHLRKHSEAKPYVCNVCHRAFRWAAGLRHHALTHTDRHP
FFCRLCNYKAKQKFQVVKHVRRHHPDQADPNQGVGKDPTTPTVHLHDVQLEDPSPPAPAAPHTGPEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH