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Report for CCDS92998.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92998.1 Public Homo sapiens 20 RAD21L1 24 110 108 CCDS HistoryNCBI Gene:642636Re-query CCDS DB by CCDS ID:92998.1Re-query CCDS DB by GeneID:642636See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92998.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000683101.1 ENSP00000507397.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000683101.1Link to Ensembl Protein Viewer:ENSP00000507397.1Re-query CCDS DB by Nucleotide ID:ENST00000683101Re-query CCDS DB by Protein ID:ENSP00000507397
Original member Current member NCBI NM_001384355.1 NP_001371284.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001384355.1Link to Protein Sequence:NP_001371284.1Re-query CCDS DB by Nucleotide ID:NM_001384355Re-query CCDS DB by Protein ID:NP_001371284Link to BLAST:NP_001371284.1

Chromosomal Locations for CCDS 92998.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 1228454 1228597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1229880 1230009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1231526 1231619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1234085 1234191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1238044 1238214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1239312 1239407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1240321 1240434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1242619 1242845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1243097 1243196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1244046 1244170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1246213 1246305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1248626 1248703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1254269 1254457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1668 nt):
ATGTTCTACACACATGTGCTTATGAGTAAACGAGGGCCATTGGCCAAAATATGGCTTGCAGCTCACTGGG
AGAAGAAACTCACAAAGGCCCATGTATTTGAATGTAATCTAGAGATAACCATTGAAAAAATTCTTTCACC
CAAGGTGAAAATAGCACTTCGAACTTCAGGACACCTTCTTTTGGGAGTTGTTCGAATCTATAACAGGAAG
GCAAAATATCTTTTGGCAGATTGCAGTGAAGCATTTCTTAAAATGAAGATGACATTTTGCCCAGGACTGG
TTGACCTTCCAAAAGAGAATTTTGAAGCATCTTACAATGCTATCACATTGCCAGAAGAATTTCATGATTT
TGACACCCAAAATATGAATGCTATTGATGTTTCAGAACACTTTACTCAGAACCAAAGCAGACCAGAAGAA
ATCACTCTTAGAGAAAATTTTGACAATGATCTAATTTTCCAAGCTGAGAGCTTTGGGGAGGAATCTGAAA
TTCTCAGAAGACATAGCTTCTTTGATGACAACATATTACTGAATTCCAGTGGTCCTTTAATTGAACATAG
TTCTGGAAGCCTCACTGGAGAACGATCTCTATTCTATGACAGTGGAGATGGGTTTGGAGATGAAGGAGCT
GCAGGAGAAATGATTGACAATCTATTGCAAGATGATCAGAATATCCTGTTAGAAGACATGCATTTGAACA
GAGAAATTTCCCTGCCTTCTGAGCCTCCCAATAGTTTAGCAGTTGAACCAGATAACTCAGAGTGTATATG
TGTACCTGAAAATGAAAAAATGAATGAAACAATATTATTATCAACTGAAGAGGAAGGATTTACCCTTGAT
CCAATTGATATTTCAGACATTGCTGAGAAAAGGAAAGGCAAAAAGAGGAGATTGCTCATAGATCCTATCA
AGGAGCTCAGTAGCAAAGTTATACATAAACAGCTTACTTCCTTTGCGGACACACTCATGGTTTTGGAACT
TGCACCTCCTACCCAAAGATTGATGATGTGGAAGAAGAGGGGAGGAGTGCATACACTTCTGTCAACTGCT
GCCCAGGATTTGATTCATGCTGAACTGAAAATGTTGTTTACAAAATGCTTTCTGTCCTCTGGCTTTAAAC
TTGGAAGAAAAATGATACAGAAGGAGTCAGTAAGGGAAGAAGTGGGAAACCAAAATATAGTAGAGACATC
CATGATGCAAGAGCCAAATTACCAGCAAGAGTTAAGTAAACCCCAAACTTGGAAGGATGTGATTGGTGGA
TCTCAGCATAGCTCTCATGAGGATACCAATAAAAATATTAACTCTGAGGATATTGTTGAAATGGTGTCTT
TAGCTGCTGAGGAATCATCTTTAATGAATGACTTATTTGCACAAGAAATTGAATATAGTCCAGTTGAATT
GGAGTCATTGAGCAATGAAGAAAATATTGAGACAGAGAGATGGAATGGAAGAATACTTCAGATGTTAAAT
CGTTTACGGGAATCTAACAAGATGGGAATGCAGTCCTTTAGTCTGATGAAGCTCTGTAGAAATAGTGACC
GAAAACAAGCAGCTGCCAAATTTTATAGCTTTCTTGTCCTAAAGAAACAGCTGGCTATTGAGCTGAGCCA
GAGTGCTCCCTATGCAGATATTATAGCTACGATGGGACCAATGTTTTATAACATATGA

Translation (555 aa):
MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSPKVKIALRTSGHLLLGVVRIYNRK
AKYLLADCSEAFLKMKMTFCPGLVDLPKENFEASYNAITLPEEFHDFDTQNMNAIDVSEHFTQNQSRPEE
ITLRENFDNDLIFQAESFGEESEILRRHSFFDDNILLNSSGPLIEHSSGSLTGERSLFYDSGDGFGDEGA
AGEMIDNLLQDDQNILLEDMHLNREISLPSEPPNSLAVEPDNSECICVPENEKMNETILLSTEEEGFTLD
PIDISDIAEKRKGKKRRLLIDPIKELSSKVIHKQLTSFADTLMVLELAPPTQRLMMWKKRGGVHTLLSTA
AQDLIHAELKMLFTKCFLSSGFKLGRKMIQKESVREEVGNQNIVETSMMQEPNYQQELSKPQTWKDVIGG
SQHSSHEDTNKNINSEDIVEMVSLAAEESSLMNDLFAQEIEYSPVELESLSNEENIETERWNGRILQMLN
RLRESNKMGMQSFSLMKLCRNSDRKQAAAKFYSFLVLKKQLAIELSQSAPYADIIATMGPMFYNI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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