NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, August 27, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9305.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9305.1 Public Homo sapiens 13 SPATA13 24 110 108 CCDS HistoryNCBI Gene:221178Re-query CCDS DB by CCDS ID:9305.1Re-query CCDS DB by GeneID:221178See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9305.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382095.8 ENSP00000371527.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000382095.8Link to Ensembl Protein Viewer:ENSP00000371527.4Re-query CCDS DB by Nucleotide ID:ENST00000382095Re-query CCDS DB by Protein ID:ENSP00000371527
Original member Current member NCBI NM_153023.4 NP_694568.1 Accepted alive Link to Nucleotide Sequence:NM_153023.4Link to Protein Sequence:NP_694568.1Re-query CCDS DB by Nucleotide ID:NM_153023Re-query CCDS DB by Protein ID:NP_694568Link to BLAST:NP_694568.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694568.1 652 Q96N96-1 652 100% 0 0

Chromosomal Locations for CCDS 9305.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 24249699 24249842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24251718 24251862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24284135 24284271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24286214 24286393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24286765 24286950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24288999 24289178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24290652 24290884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24294739 24294868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24297363 24297735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24300401 24300475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24302598 24302773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1959 nt):
ATGACTTCTGCCAGCCCTGAAGACCAGAATGCTCCAGTGGGCTGCCCCAAAGGAGCCCGGAGAAGGCGCC
CCATTTCCGTGATAGGTGGGGTCAGCTTGTATGGGACCAACCAGACGGAGGAACTGGACAATCTTCTGAC
CCAACCGGCTTCCAGGCCGCCCATGCCTGCTCACCAGGTGCCACCCTACAAGGCTGTGTCGGCCCGGTTC
CGGCCCTTCACATTCTCCCAGAGCACCCCCATTGGGTTGGACCGTGTGGGACGCCGGCGGCAGATGAGAG
CATCCAACGTTTCTTCAGATGGAGGTACTGAGCCCTCTGCCTTAGTGGATGACAACGGTAGTGAGGAGGA
CTTCAGCTATGAAGACCTCTGCCAGGCCAGCCCTCGGTACCTGCAGCCCGGCGGGGAGCAGCTGGCCATC
AATGAGCTGATCAGTGATGGCAACGTGGTCTGCGCAGAAGCCCTGTGGGACCATGTGACCATGGATGACC
AGGAACTGGGCTTCAAAGCCGGGGATGTCATCCAGGTTCTGGAAGCCTCCAACAAGGACTGGTGGTGGGG
CCGCAGTGAAGATAAGGAAGCCTGGTTCCCCGCGAGCTTCGTCAGATTGCGAGTGAATCAGGAAGAGCTG
TCGGAAAACTCCAGCAGCACCCCCAGTGAGGAGCAGGACGAGGAGGCCAGCCAGAGCCGCCACAGACACT
GTGAGAACAAGCAGCAGATGCGGACCAACGTCATCCGGGAGATCATGGACACCGAGCGGGTGTACATCAA
ACACCTCAGGGACATCTGTGAGGGCTATATCCGACAGTGCCGCAAGCACACAGGAATGTTCACCGTTGCG
CAGCTAGCCACTATTTTTGGAAACATTGAAGATATTTACAAATTCCAAAGAAAGTTTCTGAAAGACCTTG
AGAAACAGTACAACAAAGAGGAACCTCACTTAAGTGAAATAGGATCTTGCTTTCTTCAAAATCAAGAGGG
CTTTGCCATCTATTCCGAGTACTGCAACAACCACCCGGGCGCCTGCCTGGAGCTCGCCAACCTCATGAAG
CAGGGCAAGTACAGACATTTCTTTGAAGCCTGCCGCCTGCTGCAGCAGATGATTGACATCGCCATCGACG
GGTTCCTGCTCACACCAGTGCAGAAGATCTGCAAATACCCGCTGCAGCTGGCCGAGCTGCTCAAGTATAC
CACACAGGAACACGGTGATTACAGCAACATAAAGGCAGCATATGAGGCCATGAAGAATGTGGCCTGTCTG
ATCAACGAGCGCAAGCGCAAGCTGGAGAGCATCGACAAGATAGCTCGCTGGCAGGTGTCTATCGTGGGCT
GGGAGGGACTGGATATCTTAGACCGAAGCTCAGAATTGATTCATTCTGGGGAGCTGACCAAAATCACTAA
GCAAGGCAAAAGCCAGCAGCGGACGTTCTTCCTGTTTGACCACCAGCTGGTGTCCTGCAAGAAGGACCTG
CTGCGCAGGGACATGCTGTACTACAAGGGCCGGCTGGACATGGATGAGATGGAGCTTGTGGACCTGGGGG
ATGGGCGCGACAAGGACTGCAACCTCAGCGTGAAAAATGCCTTCAAGCTCGTCAGTAGGACCACAGACGA
GGTTTATTTGTTTTGTGCCAAAAAACAAGAAGACAAGGCGAGGTGGCTGCAGGCCTGTGCAGATGAAAGG
AGGCGGGTGCAAGAGGACAAGGAGATGGGAATGGAAATTTCAGAAAACCAGAAGAAACTTGCCATGTTAA
ATGCTCAAAAGGCAGGACATGGAAAGTCAAAAGGCTACAACAGGTGCCCTGTGGCCCCACCGCACCAGGG
CCTGCACCCCATCCACCAGCGCCACATCACTATGCCCACAAGCGTCCCCCAGCAGCAGGTCTTTGGCCTG
GCGGAACCCAAGAGGAAGTCCTCGCTCTTCTGGCACACCTTCAACAGGCTCACCCCCTTCCGGAAATGA

Translation (652 aa):
MTSASPEDQNAPVGCPKGARRRRPISVIGGVSLYGTNQTEELDNLLTQPASRPPMPAHQVPPYKAVSARF
RPFTFSQSTPIGLDRVGRRRQMRASNVSSDGGTEPSALVDDNGSEEDFSYEDLCQASPRYLQPGGEQLAI
NELISDGNVVCAEALWDHVTMDDQELGFKAGDVIQVLEASNKDWWWGRSEDKEAWFPASFVRLRVNQEEL
SENSSSTPSEEQDEEASQSRHRHCENKQQMRTNVIREIMDTERVYIKHLRDICEGYIRQCRKHTGMFTVA
QLATIFGNIEDIYKFQRKFLKDLEKQYNKEEPHLSEIGSCFLQNQEGFAIYSEYCNNHPGACLELANLMK
QGKYRHFFEACRLLQQMIDIAIDGFLLTPVQKICKYPLQLAELLKYTTQEHGDYSNIKAAYEAMKNVACL
INERKRKLESIDKIARWQVSIVGWEGLDILDRSSELIHSGELTKITKQGKSQQRTFFLFDHQLVSCKKDL
LRRDMLYYKGRLDMDEMELVDLGDGRDKDCNLSVKNAFKLVSRTTDEVYLFCAKKQEDKARWLQACADER
RRVQEDKEMGMEISENQKKLAMLNAQKAGHGKSKGYNRCPVAPPHQGLHPIHQRHITMPTSVPQQQVFGL
AEPKRKSSLFWHTFNRLTPFRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH