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Report for CCDS93216.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93216.1 Public Homo sapiens 3 TSEN2 24 110 108 CCDS HistoryNCBI Gene:80746Re-query CCDS DB by CCDS ID:93216.1Re-query CCDS DB by GeneID:80746See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93216.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000446004.6 ENSP00000406238.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000446004.6Link to Ensembl Protein Viewer:ENSP00000406238.2Re-query CCDS DB by Nucleotide ID:ENST00000446004Re-query CCDS DB by Protein ID:ENSP00000406238
Original member Current member EBI ENST00000679492.1 ENSP00000505331.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679492.1Link to Ensembl Protein Viewer:ENSP00000505331.1Re-query CCDS DB by Nucleotide ID:ENST00000679492Re-query CCDS DB by Protein ID:ENSP00000505331
Original member Current member EBI ENST00000680857.1 ENSP00000506578.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000680857.1Link to Ensembl Protein Viewer:ENSP00000506578.1Re-query CCDS DB by Nucleotide ID:ENST00000680857Re-query CCDS DB by Protein ID:ENSP00000506578
Original member Current member NCBI NM_001321278.2 NP_001308207.1 Accepted alive Link to Nucleotide Sequence:NM_001321278.2Link to Protein Sequence:NP_001308207.1Re-query CCDS DB by Nucleotide ID:NM_001321278Re-query CCDS DB by Protein ID:NP_001308207Link to BLAST:NP_001308207.1

Chromosomal Locations for CCDS 93216.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 12489801 12489989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12492136 12492217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12496518 12496554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12503262 12503784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12505154 12505231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12516611 12516661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12519059 12519197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12528888 12528924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12529762 12529873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12531570 12531659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12539161 12539373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1551 nt):
ATGGCAGAAGCAGTTTTCCATGCCCCAAAGAGGAAAAGAAGAGTGTATGAGACTTACGAGTCTCCATTGC
CAATCCCTTTTGGTCAGGACCATGGTCCTCTGAAAGAATTCAAGATATTCCGTGCTGAAATGATTAACAA
CAATGTGATTGTGAGGAATGCGGAGGACATTGAGCAGCTCTATGGGAAAGGTTATTTTGGAAAAGGTATT
CTTTCAAGAAGCCGTCCAAGCTTCACAATTTCAGATCCTAAACTGGTTGCTAAATGGAAAGATATGAAGA
CAAACATGCCTATCATCACATCAAAGAGGTATCAGCATAGTGTTGAGTGGGCAGCAGAGCTGATGCGTAG
ACAGGGGCAGGATGAGAGTACAGTGCGCAGAATCCTCAAGGATTACACGAAACCGCTTGAGCATCCTCCT
GTGAAAAGGAATGAAGAGGCTCAAGTGCATGACAAGCTTAACTCTGGAATGGTTTCCAACATGGAAGGCA
CAGCAGGGGGAGAGAGACCTTCTGTGGTAAACGGGGACTCTGGAAAGTCAGGTGGTGTGGGTGATCCCCG
TGAGCCATTAGGCTGCCTGCAGGAGGGCTCTGGCTGCCACCCAACAACAGAGAGCTTTGAGAAAAGCGTG
CGAGAGGATGCCTCACCTCTGCCCCATGTCTGTTGCTGCAAACAAGATGCTCTCATCCTCCAGCGTGGCC
TTCATCATGAAGACGGCAGCCAGCACATCGGCCTCCTGCATCCTGGGGACAGAGGGCCTGACCATGAGTA
CGTGCTGGTCGAGGAAGCGGAGTGTGCCATGAGCGAGAGGGAGGCTGCCCCAAATGAGGAATTGGTGCAA
AGAAACAGGTTAATATGCAGAAGAAATCCATATAGGATCTTTGAGTATTTGCAACTCAGCCTAGAAGAGG
CCTTTTTCTTGGTCTATGCTCTGGGATGTTTAAGTATTTACTATGAGAAGGAGCCTTTAACGATAGTGAA
GCTCTGGAAAGCTTTCACTGTAGTTCAGCCCACGTTCAGAACCACCTACATGGCCTACCATTACTTTCGA
AGCAAGGGCTGGGTGCCCAAAGTGGGACTCAAGTACGGGACAGATTTACTGCTATATCGGAAAGGCCCTC
CATTTTACCATGCAAGTTATTCTGTCATTATCGAGCTAGTTGATGACCATTTTGAAGGCTCTCTCCGCAG
GCCTCTCAGTTGGAAGTCCCTGGCTGCCTTGAGCAGAGTTTCCGTTAATGTCTCTAAGGAACTTATGCTG
TGCTATTTGATTAAACCCTCTACTATGACTGACAAGGAAATGGAGTCACCAGAATGTATGAAAAGGATTA
AAGTTCAGTCTCGCTCTGTCGTCCAGGCTGGAGTCCAATGCTGCGATCTTGGATCACTGCAACCTCTGCC
TGCTGGGTTTAAGCGATTCTCATGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGCACCACCACAC
ACGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACTATGTTGGCCAGGCTGGTCTGGAACTCCTG
ACCTCAAGTGA

Translation (516 aa):
MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQLYGKGYFGKGI
LSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQDESTVRRILKDYTKPLEHPP
VKRNEEAQVHDKLNSGMVSNMEGTAGGERPSVVNGDSGKSGGVGDPREPLGCLQEGSGCHPTTESFEKSV
REDASPLPHVCCCKQDALILQRGLHHEDGSQHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEELVQ
RNRLICRRNPYRIFEYLQLSLEEAFFLVYALGCLSIYYEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFR
SKGWVPKVGLKYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSKELML
CYLIKPSTMTDKEMESPECMKRIKVQSRSVVQAGVQCCDLGSLQPLPAGFKRFSCLSLLSSWDYRHAPPH
TANFCIFSRDGVSLCWPGWSGTPDLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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