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Report for CCDS93296.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93296.1 Public Homo sapiens 3 SLMAP 24 110 108 CCDS HistoryNCBI Gene:7871Re-query CCDS DB by CCDS ID:93296.1Re-query CCDS DB by GeneID:7871See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93296.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000671191.1 ENSP00000499458.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000671191.1Link to Ensembl Protein Viewer:ENSP00000499458.1Re-query CCDS DB by Nucleotide ID:ENST00000671191Re-query CCDS DB by Protein ID:ENSP00000499458
Original member Current member NCBI NM_001377540.1 NP_001364469.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001377540.1Link to Protein Sequence:NP_001364469.1Re-query CCDS DB by Nucleotide ID:NM_001377540Re-query CCDS DB by Protein ID:NP_001364469Link to BLAST:NP_001364469.1

Chromosomal Locations for CCDS 93296.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 57757652 57757849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57831383 57831530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57841299 57841371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57847197 57847233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57849754 57849816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57857733 57857828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57858088 57858159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57860699 57860839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57861949 57862086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57864548 57864716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57864807 57864857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57865242 57865292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57871636 57871698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57890041 57890100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57896511 57896591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57896873 57896932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57907884 57908006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57909076 57909150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57912381 57912701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57913158 57913275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57916906 57917077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57922889 57923023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57925845 57925928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2529 nt):
ATGCCGTCAGCCTTGGCCATCTTCACTTGCCGCCCGAACTCGCACCCGTTTCAGGAGCGTCATGTCTACC
TGGACGAGCCCATCAAAATCGGCCGCTCAGTGGCCCGCTGTCGACCAGCGCAGAATAATGCCACTTTTGA
TTGCAAAGTGCTATCAAGGAACCACGCTCTCGTCTGGTTTGATCACAAGACGGGCAAGTTTTATCTTCAA
GACACTAAAAGTAGTAATGGTACTTTTATAAATAGCCAGAGATTGAGTCGAGGCTCTGAAGAAAGTCCAC
CATGTGAAATTCTTTCCGGTGACATTATCCAGTTTGGAGTAGACGTGACAGAGAATACACGGAAAGTTAC
CCATGGGTGTATTGTTTCCACAATAAAACTTTTTCTACCAGATGGTATGGAAGCCCGGCTCCGCTCAGAT
GTCATCCATGCACCATTACCAAGTCCTGTTGACAAAGTTGCTGCTAACACTCCAAGTATGTACTCTCAGG
AACTATTCCAGCTTTCTCAGTATCTACAGGAGGCCTTACATCGGGAACAAATGTTGGAACAGAAGTTAGC
CACGCTTCAGCGGCTACTAGCCATCACCCAAGAGGCTTCAGATACCAGTTGGCAGGCTTTAATAGATGAA
GATAGACTCTTATCACGGTTAGAAGTTATGGGAAACCAATTACAGGCATGCTCCAAAAATCAAACAGAAG
ATAGTTTACGAAAGGAACTTATAGCATTACAAGAGGATAAACATAACTATGAGACAACAGCCAAAGAGTC
CCTGAGGCGGGTTCTTCAGGAGAAAATTGAAGTGGTTAGAAAACTTTCAGAAGTTGAGCGAAGTCTGAGT
AATACTGAAGATGAATGTACCCATCTGAAAGAAATGAATGAAAGGACTCAGGAAGAATTAAGAGAATTAG
CCAACAAATATAATGGAGCAGTTAATGAGATTAAAGATTTATCTGATAAATTAAAGGTAGCAGAGGGAAA
ACAAGAGGAAATCCAACAGAAGGGACAGGCTGAGAAAAAAGAATTACAACATAAAATAGATGAAATGGAA
GAAAAAGAACAGGAGCTCCAGGCAAAAATAGAAGCTTTGCAAGCTGATAATGATTTCACCAATGAAAGGC
TAACAGCTTTACAAGTACGGTTAGAACATCTTCAGGAGAAAACTCTTAAAGAATGCAGCAGCTTGGGGAT
ACAAGTTGATGACTTCTTACCTAAAATAAATGGGAGCACAGAAAAAGAGCACTTGCTTTCAAAGAGTGGC
GGGGACTGCACTTTTATTCATCAATTCATAGAATGCCAGAAGAAGCTGATCGTCGAAGGGCATCTAACCA
AAGCGGTAGAAGAAACAAAGCTTTCAAAAGAAAATCAGACAAGAGCAAAAGAATCTGATTTTTCAGATAC
TCTGAGTCCAAGCAAGGAAAAAAGCAGTGACGACACTACAGACGCCCAAATGGATGAGCAAGACCTAAAT
GAGCCTCTTGCCAAAGTGTCCCTTTTAAAAGATGACTTGCAGGGTGCACAGTCAGAAATTGAGGCAAAGC
AAGAAATACAGCATCTTCGAAAGGAATTGATCGAAGCCCAGGAGCTAGCTAGAACAAGTAAACAAAAATG
CTTTGAACTTCAAGCTCTTTTGGAAGAAGAAAGAAAAGCCTATCGAAATCAAGTTGAGGAATCCACTAAA
CAAATACAGGTTCTTCAAGCCCAATTGCAGAGGTTACACATCGATACTGAGAATCTCCGGGAGGAGAAGG
ACAGTGAAATCACAAGTACTAGAGATGAATTGCTTAGTGCCCGAGATGAAATTTTGCTCCTTCATCAAGC
AGCAGCAAAGGTTGCCTCTGAGCGGGACACTGACATTGCTTCTTTACAAGAAGAGCTTAAGAAGGTGAGA
GCTGAGCTTGAGCGGTGGCGGAAAGCAGCGTCTGAATATGAGAAAGAAATCACAAGTCTGCAAAACAGTT
TTCAGCTTAGATGTCAACAGTGTGAGGACCAGCAGAGAGAAGAAGCAACAAGGTTGCAAGGTGAACTAGA
GAAGTTGAGAAAGGAATGGAATGCATTGGAAACCGAATGCCATTCTCTAAAAAGGGAAAATGTTTTGCTA
TCATCAGAACTGCAACGGCAAGAAAAAGAATTGCACAATTCTCAGAAGCAGAGTTTAGAGCTTACCAGTG
ATCTCAGCATCCTTCAAATGTCTAGGAAAGAACTTGAGAATCAAGTGGGATCCTTGAAAGAACAGCATCT
TCGGGATTCAGCTGATTTAAAAACTCTTCTCAGTAAGGCAGAAAACCAAGCAAAGGATGTGCAGAAAGAG
TATGAAAAGACACAGACTGTACTCTCAGAACTGAAGTTGAAGTTTGAAATGACTGAGCAGGAAAAGCAGT
CAATCACAGATGAGCTCAAACAGTGTAAAAACAACCTGAAGCTGCTCCGAGAGAAAGGAAATAATCCTTC
CATATTACAACCCGTCCCAGCCGTATTCATCGGCCTATTCCTGGCTTTCCTGTTTTGGTGTTTCGGTCCA
TTGTGGTAG

Translation (842 aa):
MPSALAIFTCRPNSHPFQERHVYLDEPIKIGRSVARCRPAQNNATFDCKVLSRNHALVWFDHKTGKFYLQ
DTKSSNGTFINSQRLSRGSEESPPCEILSGDIIQFGVDVTENTRKVTHGCIVSTIKLFLPDGMEARLRSD
VIHAPLPSPVDKVAANTPSMYSQELFQLSQYLQEALHREQMLEQKLATLQRLLAITQEASDTSWQALIDE
DRLLSRLEVMGNQLQACSKNQTEDSLRKELIALQEDKHNYETTAKESLRRVLQEKIEVVRKLSEVERSLS
NTEDECTHLKEMNERTQEELRELANKYNGAVNEIKDLSDKLKVAEGKQEEIQQKGQAEKKELQHKIDEME
EKEQELQAKIEALQADNDFTNERLTALQVRLEHLQEKTLKECSSLGIQVDDFLPKINGSTEKEHLLSKSG
GDCTFIHQFIECQKKLIVEGHLTKAVEETKLSKENQTRAKESDFSDTLSPSKEKSSDDTTDAQMDEQDLN
EPLAKVSLLKDDLQGAQSEIEAKQEIQHLRKELIEAQELARTSKQKCFELQALLEEERKAYRNQVEESTK
QIQVLQAQLQRLHIDTENLREEKDSEITSTRDELLSARDEILLLHQAAAKVASERDTDIASLQEELKKVR
AELERWRKAASEYEKEITSLQNSFQLRCQQCEDQQREEATRLQGELEKLRKEWNALETECHSLKRENVLL
SSELQRQEKELHNSQKQSLELTSDLSILQMSRKELENQVGSLKEQHLRDSADLKTLLSKAENQAKDVQKE
YEKTQTVLSELKLKFEMTEQEKQSITDELKQCKNNLKLLREKGNNPSILQPVPAVFIGLFLAFLFWCFGP
LW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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